Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1077 ATGGACAAATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGGTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGTATGCTCCCATTAGCAGCTACTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAACATCGACCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATGTGAAACAGCTCAAAAGTGATGGGTGGAGTTCATACCAGACAACTAATCATTTGCCAAACTCGCAAGTTATTGCGTATCCGACCGCATCTGTTTCAGCTTCCAACTACACGAACCAAATGGACTTCACGAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGGCTCATTAGCCTACCAAAGCCATGTAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTACAAACAGTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGGCGAGAGAAGCTCAGTCAGCGGTTTATCGCTTTATCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCGGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTCCAAGAGAAAGTGAAGATACTTGAGGAACAAACCCGGAGGAAAGACATCGAATCTGTTGTATTCGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACATCAAAAGAGGAGGACGAGCCCCTTCCCGAGATTGAAGCAAGATTTTGTGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCTTAGAGAAAACAATTGCTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTCGACATAACTATTATTGCGCAGATGGATAATGAATTCTGTCTGACGTTAAAGGACCTCGTGAAGAAGTTACAGTCGACTTTGCGCTCGTTTTAA 1005 42.99 MDKSSMVVFSEMGMEDNGFVNQWHKSSMDELGMLPLAATFGENLQHSYAQTNIDQKASLNHSHNAILGYVKQLKSDGWSSYQTTNHLPNSQVIAYPTASVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLVSQGSLAYQSHVTKSNRGTRSPSTNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSQVFADGNNTSKEEDEPLPEIEARFCDKNVLIRIHCEKKKDVLEKTIAEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLRSF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8979916 8981545 - CrPI670011_02g010770.1 Cre02g1077 490358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1077 334 Coils Coil 200 227 - -
Cre02g1077 334 Gene3D - 160 233 IPR036638 GO:0046983(InterPro)
Cre02g1077 334 MobiDBLite consensus disorder prediction 144 163 - -
Cre02g1077 334 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Cre02g1077 334 PANTHER BHLH TRANSCRIPTION FACTOR 11 332 IPR052610 -
Cre02g1077 334 MobiDBLite consensus disorder prediction 144 165 - -
Cre02g1077 334 CDD bHLH_AtNAI1_like 163 235 - -
Cre02g1077 334 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983(InterPro)
Cre02g1077 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Cre02g1077 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1077 Cre-Chr2:8979916 Cre04g1424 Cre-Chr4:33044068 1.40E-43 dispersed
Cre02g1077 Cre-Chr2:8979916 Cre04g1425 Cre-Chr4:33064871 1.30E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53128 PF00010 HLH 2.40E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1077 - - - 0.0