Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1125 ATGGCGGTGGAGCTTCTCACAGCCTTCACCAACGCTCAACTCTCTTCTCCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCTCCGGCCTCGACACCCTCAAAAAGCTCATCACATTACTCTCTCACTCTCACCCTTCTAATCTCGACTCCGATTGCCAAGCCGTCGCTAACGCCGCCGTCTCCCACTTCCGAAAGGCCATTTCTCTCCTCGGCCGCTCCTCTAGAACCGGCCACGCCCGATTCCGCCGTGCCCCTTTGGATTCCTCTAAAATTTACAACGCTACGCCTATTCAACAAATTCCTCCGCCCCTCGACCGCCTCGATTCCGCCACCACCATCAATTTCTCTTACTCCGCTGCTCCTAGTTCCTCCTTCTTAACCTCGCTTCCTGGTTCCGACTCTGAAATTAAGCTCCAACATCAACCTTCTTCCTCCTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGAAAGTGCGGTTCTGAGAATTTAGGCTCAGGGAAGTGCGCTGCATCTTCTGGTGGTCGTTGCCACTGCTCTAAGAAGAGAAAAATGAGGTTGAAAAGGGTAGTGAGAGTACCAGCTATAAGCTCAAAGAACGCTGATATTCCTCCTGATGATTATTCGTGGAGGAAGTACGGGCAAAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGTAGCAGTTTAAGAGGATGTCCAGCAAGAAAGCATGTTGAGAGAGCCTCAGATGATCCATCTATGTTAATAGTGACTTATGAAGGCGATCATAATCACTCTCAATCAGTTGCAGAAGCCTCAAGTCTCATCCTTGAATCTTGGTGA 870 49.08 MAVELLTAFTNAQLSSPMDQDSAVQEAASGLDTLKKLITLLSHSHPSNLDSDCQAVANAAVSHFRKAISLLGRSSRTGHARFRRAPLDSSKIYNATPIQQIPPPLDRLDSATTINFSYSAAPSSSFLTSLPGSDSEIKLQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCAASSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10047212 10048570 - CrPI670011_02g011250.1 Cre02g1125 490406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1125 289 SMART WRKY_cls 216 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g1125 289 ProSiteProfiles WRKY domain profile. 211 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g1125 289 Pfam WRKY DNA -binding domain 218 274 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g1125 289 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 279 IPR044810 GO:0003700(InterPro)
Cre02g1125 289 Gene3D WRKY domain 200 277 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g1125 289 SUPERFAMILY WRKY DNA-binding domain 212 276 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g1125 289 FunFam WRKY transcription factor 65 200 277 - -
Cre02g1125 289 Pfam Plant zinc cluster domain 168 214 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1125 Cre-Chr2:10047212 Cre05g2205 Cre-Chr5:33756245 9.90E-67 dispersed
Cre02g1125 Cre-Chr2:10047212 Cre04g1325 Cre-Chr4:32071065 8.10E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53130 PF03106 WRKY 2.50E-26 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1125 - - - 0.0