Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1140 ATGGGAACCCTTTCCTTCCCAATTGCGTCCTCAAAATCCCGACTCTTATCGACTCCGCATCCAATTGCTTTTTCTATCCGTTTTCTTCAAACATCTTTCCCTTCTTCTGCAATTCACCTTCGTAATTCTCCCATTCTCCATCTACGGCGACGTGTTCTCTGTTCTGCTGCAGAAACTGGTCGTTCGAATCACGATGACCACCACCATGTTCATGATCACCAGCACCACCAGCACCAGCACCAGCACCAGCACCACCACCAGCACCAGCACCAGCACCAGCACCAGCACCACCACCATGGTCATCACCATTGTGATCATGATGTGGAGCTGTCTGGGCCTCAGAAAGCGGTGATTGGATTTGCTAAAGCCATTAGGTGGACAGACTTGGCTAGCTATCTCAGGGAACACTTGCAATTATGTTGCTGCTCTATGGCTTTGTTTGTAGCTGCTGCTGTTTCCCCATATTTGGTGCCGAAGCTCATTGCAAAGCCTTTGCAAAATGCTTTCATTGTCATTGCTTTTCCTTTAGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGTGGAAAAGTAAACATCCATACACTTATGGCTCTTGCAGCCTTTGCTTCCATCTTTATGGGGAACGCCTTGGAAGGAGGACTACTACTTGCCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTACAAGTCGTGCAATGATTGATGTCAAAGAGTTGAAGGAAAACTATCCAGACTCTGCCCTTGTTTTAGATACAAATGATGGTAAACTTCCAAATATTACAGATTTGTCCTACCAAAAGGTGCCTGTCCATGATATAGAGTTGGACTCCTATATATTGGTTGGAGCTGGTGAGTTTGTGCCTATAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTGGAGATTACGGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTTTGAGTCGTATAGTGAACTTGACTGAAGAAGCACAACTGAATAAGCCAAGACTTCAGAGGTGGCTTGATGAATTTGGTGAGCATTATAGCAAAGCAGTTGTAGTATTGGCCATTGCTATTGCCCTCGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCAGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCGTGTATTAGATGCTTTAGCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGGGGGCTCATTTTCAAAGCGATTGAACCAATTTACGGACATGAGGTTGGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCCATGGAGAAGGGTACTACTCACCCCATTGGAAGAGCTGTGGTCGACCATAGTATGGGAAAAGACCTCCCATCCTTTTCTGTCCAGAATTTGGAATATTTTCCGGGTAGAGGACTTGTTGCAACTCTGCATGGTACTGAGTCGGGAACTGAAGGTGGGAAACTATTGAAAGCATCTCTTGGGTCCTTAGATTTCATCACTTCATGCTACAAATCAGAAACCAAATCAAAAGAGATCAAAGAAGCTGCGAGCACATCTTCATATGGAAGTGAGTTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTGTAATAGCTGAATTAACAGATAGAGCTAAACTTCATGTAATGATGTTGACTGGAGATCATGAGTCAAGTGCACGGAGAGTGGCAAACGCAGTGGGCATCAAGGAAGTTCACTTCAGTCTAAAGCCTGAAGACAAGCTTAGTCACGTCAAAAGTATCTCTAGGGAGAATGGAGGAGGACTAATTATGGTTGGTGAAGGCATTAATGATGCACCAGCCCTTGCTGCTGCTACCGTAGGCATAGTGCTTGCTCAACGTGCTAGTGCAACTGCTATAGCTGTGGCTGATGTTCTGTTGCTGCGGGATAACATATCTGGTGTACCATTCTGTATTGCCAAGTCTCGCCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCTTTGTTTTCAATATTTGTGGCCTCTCTTCCTGCAGTTCTAGGGTTTCTTCCCTTGTGGTTAACGGTACTTCTGCACGAAGGTGGTACTCTTCTCGTTTGCCTCAATTCCATACGTGCTCTGAATAATCCTAGTTGGTCCTGGAAGCAGGACTTGAAGCAATTGCTAATGGAGCTGAAATTTAAAGACTCGCAGCCTAGCCATAATACCAGCTCTACTACTCTACAATCTTCCCCTGTATAG 2508 44.86 MGTLSFPIASSKSRLLSTPHPIAFSIRFLQTSFPSSAIHLRNSPILHLRRRVLCSAAETGRSNHDDHHHVHDHQHHQHQHQHQHHHQHQHQHQHQHHHHGHHHCDHDVELSGPQKAVIGFAKAIRWTDLASYLREHLQLCCCSMALFVAAAVSPYLVPKLIAKPLQNAFIVIAFPLVGVSSSLDALTDISGGKVNIHTLMALAAFASIFMGNALEGGLLLAMFNLSHIAEEYFTSRAMIDVKELKENYPDSALVLDTNDGKLPNITDLSYQKVPVHDIELDSYILVGAGEFVPIDCEVFQGSATVTIEHLTGEIKPLEITVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLAIAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHEVGENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSMGKDLPSFSVQNLEYFPGRGLVATLHGTESGTEGGKLLKASLGSLDFITSCYKSETKSKEIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSVIAELTDRAKLHVMMLTGDHESSARRVANAVGIKEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCIAKSRQTTALVKQNASLALFSIFVASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWKQDLKQLLMELKFKDSQPSHNTSSTTLQSSPV 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10378775 10405230 - CrPI670011_02g011400.1 Cre02g1140 490421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1140 835 Gene3D - 473 623 IPR023299 GO:0000166(InterPro)
Cre02g1140 835 SUPERFAMILY Calcium ATPase, transduction domain A 267 355 IPR008250 -
Cre02g1140 835 NCBIfam HAD-IC family P-type ATPase 269 485 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre02g1140 835 NCBIfam HAD-IC family P-type ATPase 598 772 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre02g1140 835 SUPERFAMILY Calcium ATPase, transmembrane domain M 199 775 IPR023298 -
Cre02g1140 835 SUPERFAMILY HAD-like 460 792 IPR036412 -
Cre02g1140 835 SFLD Haloacid Dehalogenase 444 745 - -
Cre02g1140 835 Pfam E1-E2 ATPase 266 442 - -
Cre02g1140 835 PRINTS P-type cation-transporting ATPase superfamily signature 638 648 - -
Cre02g1140 835 PRINTS P-type cation-transporting ATPase superfamily signature 462 476 - -
Cre02g1140 835 PRINTS P-type cation-transporting ATPase superfamily signature 692 711 - -
Cre02g1140 835 PRINTS P-type cation-transporting ATPase superfamily signature 716 728 - -
Cre02g1140 835 NCBIfam heavy metal translocating P-type ATPase 196 794 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cre02g1140 835 MobiDBLite consensus disorder prediction 59 108 - -
Cre02g1140 835 Pfam haloacid dehalogenase-like hydrolase 460 705 - -
Cre02g1140 835 MobiDBLite consensus disorder prediction 73 101 - -
Cre02g1140 835 SFLD p-type atpase 444 745 IPR044492 -
Cre02g1140 835 CDD P-type_ATPase_HM 140 794 - -
Cre02g1140 835 ProSitePatterns E1-E2 ATPases phosphorylation site. 464 470 IPR018303 -
Cre02g1140 835 Gene3D - 455 743 IPR023214 -
Cre02g1140 835 Gene3D - 234 360 - -
Cre02g1140 835 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 58 826 IPR051949 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1082 Cre-Chr2:9096124 Cre02g1140 Cre-Chr2:10378775 0.00E+00 dispersed
Cre02g1140 Cre-Chr2:10378775 Cre05g1742 Cre-Chr5:29135965 2.10E-48 dispersed
Cre11g1632 Cre-Chr11:27210333 Cre02g1140 Cre-Chr2:10378775 3.10E-08 dispersed
Cre02g1140 Cre-Chr2:10378775 Cre06g2228 Cre-Chr6:30154281 9.90E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1140 K01534 - mdm:103453726 1132.47