Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g1168 | ATGCACCTTTTCTCAAAACCACCAATGGACTACTCTCCACCAAACTGGAACTGGCTCTTCGATTACTATACAATGGATGATCTCCCCGTCGTCGACGCCCACTTCTCGCCGCCGCAGTCCATCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTTCATCTCAACACAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCTCAAAGGAAATGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTACTGTCCTGGAACCTGGAAAACCACCCAAAACCGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGTCTGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCGATGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAAAAAGAAAATTTGGAGCTGCAAATCAAAGCAGTGAATACTCGAGCAGCTGACATCCAGCATCCTCCCCCTACACTGTCAGCTGCATTTACAGCACAAGGGCAAGTGGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTCGACATATCACAGGATCACGTGCTCCGCCCACCAGTTGCTTGA | 741 | 47.23 | MHLFSKPPMDYSPPNWNWLFDYYTMDDLPVVDAHFSPPQSISFSWSNPSINFSSQHSLEVDCSYEDLDSSKEMGRKRLRGETSAASTSKACREKQRRDKLNERFLELATVLEPGKPPKTDKVAILSDAIRMMSDLQCETQKLRESMEDLKAKIKELKVEKNELRDEKQRLRAEKENLELQIKAVNTRAADIQHPPPTLSAAFTAQGQVAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 10832553 | 10835414 | + | CrPI670011_02g011680.1 | Cre02g1168 | 490449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g1168 | 246 | CDD | bZIP | 150 | 182 | - | - | |
Cre02g1168 | 246 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 89 | 160 | IPR036638 | GO:0046983(InterPro) | |
Cre02g1168 | 246 | Gene3D | - | 87 | 160 | IPR036638 | GO:0046983(InterPro) | |
Cre02g1168 | 246 | Coils | Coil | 132 | 187 | - | - | |
Cre02g1168 | 246 | FunFam | Transcription factor bHLH34 | 75 | 133 | - | - | |
Cre02g1168 | 246 | Pfam | Helix-loop-helix DNA-binding domain | 87 | 136 | IPR011598 | GO:0046983(InterPro) | |
Cre02g1168 | 246 | CDD | bHLH_AtILR3_like | 89 | 164 | - | - | |
Cre02g1168 | 246 | MobiDBLite | consensus disorder prediction | 76 | 96 | - | - | |
Cre02g1168 | 246 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 84 | 135 | IPR011598 | GO:0046983(InterPro) | |
Cre02g1168 | 246 | PANTHER | BHLH TRANSCRIPTION FACTOR | 17 | 246 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Cre02g1168 | 246 | SMART | finulus | 90 | 141 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1168 | Cre-Chr2:10832553 | Cre05g1645 | Cre-Chr5:27158309 | 2.50E-55 | dispersed | |
Cre02g1168 | Cre-Chr2:10832553 | Cre10g0787 | Cre-Chr10:7746780 | 1.00E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53132 | PF00010 | HLH | 4.50E-11 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g1168 | - | - | - | 0.0 |