Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1179 ATGATTTCTTCAAACATGGTGGCTCAATCTGTAGAGCTTCTTCCTGTTGTCCTACAAGGAACGTGGCTAACTAATCAGTTGCAGCTTGGTTTCTATGCCAAAAGCTGCCCAAACGCTGAGAAGATTGTGCTGGATTTCGTTCACCAGCATATCCACAATGCCCCTTCACTGGCAGCAACTTTCATTAGAATGCACTTCCATGATTGCTTTGTCAGGGGTTGTGATGGATCTGTGCTTATAAACTCCACCTCAAATAACCAAGCTGAGAAGGATTCTCAGCCAAATCAAACACTCAGAGGTTTTGACTTCATTGATAGAGTCAAAAGCTTACTTGAAGCTGAATGCCCTGGAGTGGTCTCTTGCGCAGATGTTCTTTCCTTGGTTGCAAGAGATACCATTGTAGCCACAGGAGGTCCATACTGGGAAGTTCCAACTGGCCGAAGGGATGGAGTAATCTCAAGATCATCAGAAGCCTTGAATAACATTCCTCCTCCATTTGGGAACTTTTCCACACTGCAAAGACTTTTCGCAAACCAAGGCCTTGATCTAAAAGACTTGGTGTTACTATCTGGCGCTCACACAATCGGTATCGCACACTGCTCATCATTCAGAAACCGACTCTACAATTTCACCGGCGTCGGAGACCAAGATCCCTCTCTGGACCCAAGATACGCCGCTAATCTGAAGGCCAACAAATGCAAAACTCCGACCGACAACAGCAAAGTGGAAATGGACCCTGGAAGTCGCAATACTTTTGACCTTAGCTACTATTCTCTTCTACTAAAAAGGAGGGGCCTCTTCGAATCCGATGCTGCTCTCACTACAGACGCAACTACATTGGGTTTAGTTCAGAAACTGGTACAAGGACCCATTGAAGAATTCTTCGCTGAATTTGCAGCATCCATGGAGAAAATGGGTCGGATTAAAGTGAAGACTGGAACTGAAGGTGAAATCAGAAGGAGATGCGCTGTGGTGAATAGTTGA 984 45.43 MISSNMVAQSVELLPVVLQGTWLTNQLQLGFYAKSCPNAEKIVLDFVHQHIHNAPSLAATFIRMHFHDCFVRGCDGSVLINSTSNNQAEKDSQPNQTLRGFDFIDRVKSLLEAECPGVVSCADVLSLVARDTIVATGGPYWEVPTGRRDGVISRSSEALNNIPPPFGNFSTLQRLFANQGLDLKDLVLLSGAHTIGIAHCSSFRNRLYNFTGVGDQDPSLDPRYAANLKANKCKTPTDNSKVEMDPGSRNTFDLSYYSLLLKRRGLFESDAALTTDATTLGLVQKLVQGPIEEFFAEFAASMEKMGRIKVKTGTEGEIRRRCAVVNS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11047108 11049005 - CrPI670011_02g011790.1 Cre02g1179 490460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1179 327 PANTHER PEROXIDASE 25-RELATED 23 322 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 Pfam Peroxidase 45 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 Gene3D - 30 326 - -
Cre02g1179 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cre02g1179 327 ProSiteProfiles Plant heme peroxidase family profile. 26 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 Gene3D Peroxidase, domain 2 163 305 - -
Cre02g1179 327 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1179 327 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Cre02g1179 327 CDD secretory_peroxidase 26 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre02g1179 327 FunFam Peroxidase 30 170 - -
Cre02g1179 327 FunFam Peroxidase 163 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0513 Cre-Chr2:2222810 Cre02g1179 Cre-Chr2:11047108 1.00E-93 dispersed
Cre02g1179 Cre-Chr2:11047108 Cre06g1309 Cre-Chr6:7047846 7.20E-82 dispersed
Cre02g0512 Cre-Chr2:2214288 Cre02g1179 Cre-Chr2:11047108 9.00E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1179 K00430 - csv:101213629 573.548