Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1184 ATGAACGATTTGCTCACGGACTCATTCGTTAGCGATGCCAAAGGTGAGGCTTCTAGAGAAATTGATCTTGAGAAGGGAACTCGAGTTCCGCGAAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTTGAGGTTCAAGTAGAGAAGCTCTCTGGGCTTCTTATTAAACTGAAGGGTGCTAATGAGGAATCGAAGGCTGTTACCAAAGCCTTAGAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTAGGGAAAATAGCACGCAATGTCAAGGGGAAGCTGGAGGCTGTAAATAAAGATAACTTGACCAATAGGCAGAAGCCCGGGTGTGAGAAGGGAACGGCTATCGACAGAGCAAGAATGAACGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGGCAAAGAATTCAAGATGAGTACCGTGAAGTTGTGGAAAGACGAGTGATTACAGTTACGGGAAGCAGACCAGATGAGACGACAATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCATTTGTACAAATGGGACGAGGACAGGTTATCAGTGCGGTGGAGGAAATTCAAGAGCGACACGATGCAGTTAAAGAGATTGAGAAAAGGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGGTAACGAATGCAGTGGATCACGTTCGAACGGGAACCGATGCACTCCAGACAGCGAAGAGCTTACAGAAGCGATCAAGAAAATGCATGATGATTGGCATCATATTGCTGCTGGTCATAGCAATCATAATCGTCCTCGCAGTGCATCCATGGAAGAAGTAA 915 43.93 MNDLLTDSFVSDAKGEASREIDLEKGTRVPRSNSDMGMEAFNKQIQDVEVQVEKLSGLLIKLKGANEESKAVTKALEMKAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGSRPDETTIDHLIETGNSEQIFQNAFVQMGRGQVISAVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALQTAKSLQKRSRKCMMIGIILLLVIAIIIVLAVHPWKK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11188359 11191429 - CrPI670011_02g011840.1 Cre02g1184 490465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1184 304 Coils Coil 38 58 - -
Cre02g1184 304 Gene3D - 199 300 - -
Cre02g1184 304 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre02g1184 304 SMART tSNARE_6 203 270 IPR000727 -
Cre02g1184 304 Pfam Syntaxin 41 242 IPR006011 GO:0016020(InterPro)
Cre02g1184 304 CDD SynN 38 195 IPR006011 GO:0016020(InterPro)
Cre02g1184 304 Pfam SNARE domain 244 296 IPR000727 -
Cre02g1184 304 CDD SNARE_syntaxin1-like 207 269 - -
Cre02g1184 304 PANTHER SYNTAXIN 40 289 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cre02g1184 304 SMART SynN_4 33 159 IPR006011 GO:0016020(InterPro)
Cre02g1184 304 Gene3D - 33 162 - -
Cre02g1184 304 FunFam Syntaxin 132 201 301 - -
Cre02g1184 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1184 Cre-Chr2:11188359 Cre10g1499 Cre-Chr10:28862408 2.40E-87 dispersed
Cre02g1182 Cre-Chr2:11140153 Cre02g1184 Cre-Chr2:11188359 3.40E-68 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1184 K08486 - csv:101214355 514.227