Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1186 ATGCCTGCCGGAATTATGACACCGGCCAGAAGCATGGCGTCGATGATTGGAAGAAATGAGAATAATGCTGCTGGATTTGCCTCTCCTTCTGGATTTCCTCTTTCTCAGTCAAGCATGATGGACAGTCATCTCCTCCCCTTAGACATCCCTCAAAACACTTCCGAAAGCGACCTTGCTCGAATCCGAGACGATGACTTCGACAGTGCCACTAAATCCGGCAGCGACAACAACCCTGACCTTGTCTCCGGTGACGACCAAGATCCTCGTCCTAAAAAGAAGCGCTATCATCGCCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGAAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACTCAACTTAGAACAGAAAATGAGAAGCTTAGGGCTGATAACATGAGATACAGAGAAGCTCTTAGCAATGCCTCGTGCCCTAATTGTGGTGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCCCGTCTTCGCGAAGAGATCGATCGCATTTCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTCGTGAACTACCCTCTACTTTCTCCACCAGTTCCAGCTCGCCCACTAGAGCTAGGAATGGGCAACTTCGGACCACAACCAGGCCTTGGAGGAGGAGACCTCTACAGCTCGGCCAGCGACCTGATCCGATCCATCAGCGCCCCAACCGAGGCTGATAAGCCAATGATCATCGAGCTAGCAGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAAATAGGGGAGCCATTGTGGATGACTAGCCTTGATGGCTCCACCCATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGTCCTAAGCCTTCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAACCACATTAACCTAGTTGAGATTCTCATGGATGTGAACCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTATTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCGCCATTAGTTCCGACCCGGGAAAGCTACTTCGTTAGATATTGTAAGCAACATGGGGATGGGACATGGGCGGTGGTGGATGTTTCGTTGGATGATTTGCGCCCTACCCCCGGAGTTCGATGTAGACGAAGACCTTCCGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCGAAGGTTACATGGGTTGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTAGTGAGCTCTGGCCAAGCTTTTGGGGCCAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCTAGTGCCATGGCCACTAATATTCCAACTGGGGATGTTGGAGTGATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACCACTTTGTCGGGTACGGGTGCGGACGATGTTCGAGTCATGACTCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATTGTCCTCAGCGCTGCAACTTCCTTCTGGCTCCATGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCTCGCAGCGAGTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCCCACATTGCCAACGGCCGTGACACTGGCAACTGCGTTTCTCTCTTACGAGTAAATAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACGGACCCAACAGCCTCATTTGTGATCTACGCTCCAGTTGACATAGTAGCAATGAACGTCGTCCTGAACGGCGGTGATCCCGACTACGTAGCACTTCTCCCCTCAGGCTTTGCCATTCTCCCCGACGGCGCTGGCGGAGAGGGCGTTTCCGGTGGGTCGTTGCTGACGGTTGCATTTCAAATCCTGGTGGATTCAGTGCCCACGGCAAAACTGTCACTTGGGTCAATTGCAACGGTAAACAATCTGATAGCTTGTACGGTGGAGAGGATAAAAGCGTCATTATCATGTGAGAATGCATAA 2271 48.61 MPAGIMTPARSMASMIGRNENNAAGFASPSGFPLSQSSMMDSHLLPLDIPQNTSESDLARIRDDDFDSATKSGSDNNPDLVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPARPLELGMGNFGPQPGLGGGDLYSSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQIGEPLWMTSLDGSTHVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLHVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGAGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSIATVNNLIACTVERIKASLSCENA 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11293138 11298024 + CrPI670011_02g011860.1 Cre02g1186 490467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1186 756 Pfam Homeodomain 92 148 IPR001356 GO:0003677(InterPro)
Cre02g1186 756 FunFam Homeobox-leucine zipper protein HDG1 79 165 - -
Cre02g1186 756 SMART START_1 283 503 IPR002913 GO:0008289(InterPro)
Cre02g1186 756 MobiDBLite consensus disorder prediction 65 100 - -
Cre02g1186 756 Gene3D - 333 502 IPR023393 -
Cre02g1186 756 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289(InterPro)
Cre02g1186 756 CDD homeodomain 92 150 IPR001356 GO:0003677(InterPro)
Cre02g1186 756 FunFam Homeobox-leucine zipper protein GLABRA 2 283 502 - -
Cre02g1186 756 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
Cre02g1186 756 Pfam START domain 284 503 IPR002913 GO:0008289(InterPro)
Cre02g1186 756 SUPERFAMILY Bet v1-like 274 505 - -
Cre02g1186 756 CDD START_ArGLABRA2_like 278 502 - -
Cre02g1186 756 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677(InterPro)
Cre02g1186 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 72 754 IPR042160 -
Cre02g1186 756 SMART HOX_1 90 153 IPR001356 GO:0003677(InterPro)
Cre02g1186 756 Coils Coil 143 175 - -
Cre02g1186 756 SUPERFAMILY Bet v1-like 522 748 - -
Cre02g1186 756 Gene3D - 81 166 - -
Cre02g1186 756 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1598 Cre-Chr1:29049219 Cre02g1186 Cre-Chr2:11293138 1.00E-186 dispersed
Cre02g1186 Cre-Chr2:11293138 Cre04g1828 Cre-Chr4:36064537 1.30E-264 dispersed
Cre05g1571 Cre-Chr5:24136653 Cre02g1186 Cre-Chr2:11293138 7.30E-109 transposed
Cre07g0497 Cre-Chr7:2763046 Cre02g1186 Cre-Chr2:11293138 9.10E-16 transposed
Cre02g0518 Cre-Chr2:2255819 Cre02g1186 Cre-Chr2:11293138 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53136 PF01852 START 1.10E-59 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1186 K09338 - csv:101214763 1439.48