Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1193 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAAACAAAGGGTGTTGAATGTTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAACCTGCAATTTTAGCTGCCCTGGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGCGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGCTGTTATTGGGCCGCAATCTTCGGGCATCGTTCATGTCATTTCTCATGTTATTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAGCAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTCCAAATGAATGCAATTGCTGATATGGTAGATTATTTTGGATGGAGAGAGGTCGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCAGCATTGAATGATGCCTTAGTGAAGAAGCGAGCCAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGAAATAAGTGACTTGTTGGCTTCGATAAACTTGATGGAATCTCGGGTTTACATTGTACACGTCAATCCCGACACAGGTTTATCAATATTTTCAATAGCTAAGAAACTTCAAATGATGAGTAGTGGCTATGTCTGGATCGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTAATGTAATGAATCAGTTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGTCAATCTGAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATACAAGAAGAGTCGAAACTTCAATTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCGTGCTCTTGACACATTTATTAAAGAAGGTGGAAATATATCCTTTTCTAATGACCCGAAGTTACGTGAAAACAATGGAAGCATGTTGCAGTTAAAATCCCTCCGAGTGTTTAACGACGGTGAACAACTTCTACAGACAATTAAGAGAACAAACTTCACTGGTGTAAGTGGGCAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCAGCTTATGATATCTTGAACATTGGGGGAACTGGTTCACGTAGAATTGGCTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAGAACTTGTATACCAAGCATCTTAATGCTTCCTCAAATAACCATCTCTATAGTGTCATATGGCCAGGTGAAATAACGACCGTTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAGTCTTGTATATGAGGTTTCGCAGAATAAATACGATGCAGCTGTTGGAGATATTACTATTGTAACGAATAGGACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAAACAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTTTTTATTTTTGTTGGAGCAGTTGTCTGGATTCTCGAGCACCGGACTAATGAAGAGTTTCGTGGTCCGCCAAGGCAACAATTAATTACAATATTTTGGTTTAGTTTCTCAACGATGTTCTTTTCTCATAAGGAAAATACTGTAAGCACCCTCGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACAGTGCAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAATTGAAAAATCAAGAGGAATATGCTGATGCTCTTAAGCGTGGATCGGGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACCGATTGCCTATACAGGACAGTTGGACAGGAGTTCACTAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTTTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCGCGAACTGAGTGTTCGATGAGCTTGAACCAAGTCGACGTAAGCCAACTATCATTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCATGTTTTGTTGCTCTTTCGGTATTCTTCTTTCGAGTATTATTCCAATATCGAAGATTTACCCCAGAAAACCAGCCTGAAGTTGAAGAGATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACTAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTCAAAGGCAAACTAAAAAAAAAAACAAATGATAAGAAACAAACTAGTCAGAGCTCAGAGGACCACCTTGATTCACCTCCTTGA 2802 40.58 MKVFWIRRNGHWVKSRVMLFALLLLFGMWMPLGVIGVSSSKQRVLNVGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVAVIGPQSSGIVHVISHVINELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVDYFGWREVVAIFVDDDNGRSGISALNDALVKKRAKISYKAAFPPGSSNSEISDLLASINLMESRVYIVHVNPDTGLSIFSIAKKLQMMSSGYVWIATDWLPSFLDSFETNSPNVMNQLQGVVALRHHTPDVNLKKNFVSKWRNLKYKKSRNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDPKLRENNGSMLQLKSLRVFNDGEQLLQTIKRTNFTGVSGQIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKHLNASSNNHLYSVIWPGEITTVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNSLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKQEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYADALKRGSGNGGVAAIVDELPYVELFLAGTDCLYRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVSQLSLSSFWGLFLICGIACFVALSVFFFRVLFQYRRFTPENQPEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKGKLKKKTNDKKQTSQSSEDHLDSPP 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11430267 11434974 - CrPI670011_02g011930.1 Cre02g1193 490474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1193 933 Gene3D - 774 827 - -
Cre02g1193 933 FunFam Glutamate receptor 160 323 - -
Cre02g1193 933 Gene3D - 160 433 - -
Cre02g1193 933 FunFam Glutamate receptor 716 824 - -
Cre02g1193 933 SUPERFAMILY Periplasmic binding protein-like II 454 821 - -
Cre02g1193 933 SMART GluR_14 480 822 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre02g1193 933 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Cre02g1193 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 912 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cre02g1193 933 Gene3D - 473 588 - -
Cre02g1193 933 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Cre02g1193 933 CDD GluR_Plant 477 820 - -
Cre02g1193 933 Pfam Ligated ion channel L-glutamate- and glycine-binding site 500 581 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre02g1193 933 PIRSF IGluLR_plant 14 932 IPR017103 -
Cre02g1193 933 FunFam Glutamate receptor 474 590 - -
Cre02g1193 933 Pfam Ligand-gated ion channel 599 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre02g1193 933 FunFam Glutamate receptor 590 720 - -
Cre02g1193 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cre02g1193 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cre02g1193 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Cre02g1193 933 Pfam Receptor family ligand binding region 61 418 IPR001828 -
Cre02g1193 933 Gene3D - 589 721 - -
Cre02g1193 933 Gene3D - 64 408 - -
Cre02g1193 933 MobiDBLite consensus disorder prediction 907 933 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0670 Cre-Chr2:3645098 Cre02g1193 Cre-Chr2:11430267 4.60E-251 dispersed
Cre02g1193 Cre-Chr2:11430267 Cre11g2281 Cre-Chr11:34516349 5.10E-282 dispersed
Cre02g1191 Cre-Chr2:11372832 Cre02g1193 Cre-Chr2:11430267 0.00E+00 proximal
Cre02g1193 Cre-Chr2:11430267 Cre02g1195 Cre-Chr2:11525470 4.40E-249 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1193 K05387 - csv:101215485 1669.06