Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1195 ATGTTGAAAACATTGCAAATGACCCTCCCACTGTCGCTACGCGATTCTTGGTTTGGTAGACATTGTCGGAGAACTGCTCGGAGTTGTAAGCGTCGATCAACAATGATTGATGGGATCATCGGCGAAACCAGCACCACGTTGTTAAACAGCTTTTGGGCGTCAAATCGGATGCGTGCATTAATTGGGAACAGGGTCCTGTTTTGGCTTAAAATCCTCTCCGATCTCCAGCTCTGTGAAAGCGTGAATCAGCCAGCAGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAATTATAGGAAGAGTGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTGAATGCAGATCCTTCCATTCTCAATGGAACAAAGCTGAATCTGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTAGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCCTTCTTCCTACGAACTACTCAGAGTGATGCCTACCAAATGACTGCTATGGCAGATTTAATTGACTTTTATGAGTGGAAGGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAGCTTGACAAAAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTTTAATCTCAGTGAAATCACAGTCATGCTCAATAAATCCAAGTTGCTCGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCTGTTCTGCCTGTGCAACAAACCTCTATAGACATCCTTCAAGGCGTGGTTGTACTTCGTCAACATATTCCTGAATCCAACCAACAAACAACATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGGCTCCAGAAATTCTTCGTTGAATGTCTATGCTCTTAGTGCCTATGATACGATTCAAGTAGCTGCACGTGCAATTGATAAGTTTCTAAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCAGATTGAGTTTAATTCAGATCGGAACCTTGTCAATAGAGGCTATGAGGTGATCAATATTGATCAGACGGGACTGCGTAGAGTTGGTTATTGGTCCAATGTCACAGGCTTTACCATCCAATCCCCAGAAACTCTGAAGCAGAAACGAATTAGTTATTCCCACCTGAACCAGGCTCTTGGCAATGTTAGCTGGCCTGGTGGAAAGACAGAAAGACCACGTGGTTGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACGTAGAGTAAGTTTCATTGAATTTGTTACTGCAGTCAATGGAAGCCACGAAAACATTGAAGGATTCTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCTTATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGATGACCTTGTGAAGAACGTTGCAAATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTTACCAATCGAACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGGCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAACCATTTACAACAGAGATGTGGTGCGTAACATCGGCGTCCTTTTTTATGATTGGGGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTGTTCAGCTTCTCGACATTGTTTAAAACGAATCAGGAAGCTACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACGTCAAGCTATACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAATGAACAGCCAATTGGCTACCAGGTAGGATCATTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGACTTGTATCTCTAGGCTCTCCAGAAGAGTATGAATCAGCACTGCTAAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGTAGATGAACTTCCATATATGGAATTGTTCTTATCAGGGAGGAATGATTTCGGAATGATTGGACAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCGGTAGACATGTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGAAGATCCATGAGAAGTGGTTTTGTAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACCAGCTTCAGTTGGTCAGCTTCTGGGGTCTGTATCTCTTATGCGGTGCCTTTTCACTCGTTGCTCTTCTTATATTTTTGCTCCGCATAGTTCGACAATTTGCTCGTTACATACGACAACAGAAGGAATCTTCTCATGCAGAATTGGTGTCATCAAATTCAAACTCAAGCTGGACTCAGGTTATATATAAGTTTATTGACTTTGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGTATGATAATCAGAATCAGGCTAGCCAATAG 2919 41.66 MLKTLQMTLPLSLRDSWFGRHCRRTARSCKRRSTMIDGIIGETSTTLLNSFWASNRMRALIGNRVLFWLKILSDLQLCESVNQPAVVNIGAVFTFDSIIGRVAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHFNLSEITVMLNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSVLPVQQTSIDILQGVVVLRQHIPESNQQTTLWSRLRKMLPEGSRNSSLNVYALSAYDTIQVAARAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGQIEFNSDRNLVNRGYEVINIDQTGLRRVGYWSNVTGFTIQSPETLKQKRISYSHLNQALGNVSWPGGKTERPRGWVIADNERPLIIGVPRRVSFIEFVTAVNGSHENIEGFCIDLFNEARKLVPYDVPYRFIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTTEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITNEQPIGYQVGSFAYSYLTESLYLPRSRLVSLGSPEEYESALLKGPFKKGGVAAIVDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDMSTAILKLSENGKLQKIHEKWFCKMGCPGERRRKSEPNQLQLVSFWGLYLLCGAFSLVALLIFLLRIVRQFARYIRQQKESSHAELVSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKYDNQNQASQ 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11525470 11531691 - CrPI670011_02g011950.1 Cre02g1195 490476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1195 972 FunFam Glutamate receptor 519 636 - -
Cre02g1195 972 FunFam Glutamate receptor 636 766 - -
Cre02g1195 972 Pfam Receptor family ligand binding region 104 461 IPR001828 -
Cre02g1195 972 FunFam Glutamate receptor 762 870 - -
Cre02g1195 972 Gene3D - 105 452 - -
Cre02g1195 972 SUPERFAMILY Periplasmic binding protein-like II 499 866 - -
Cre02g1195 972 Coils Coil 950 970 - -
Cre02g1195 972 Gene3D - 202 476 - -
Cre02g1195 972 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 87 929 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cre02g1195 972 SMART GluR_14 525 868 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre02g1195 972 CDD PBP1_GABAb_receptor_plant 88 478 IPR044440 -
Cre02g1195 972 PIRSF IGluLR_plant 58 972 IPR017103 -
Cre02g1195 972 SUPERFAMILY Periplasmic binding protein-like I 83 516 IPR028082 -
Cre02g1195 972 Gene3D - 532 635 - -
Cre02g1195 972 FunFam Glutamate receptor 202 358 - -
Cre02g1195 972 Gene3D - 814 873 - -
Cre02g1195 972 Gene3D - 636 768 - -
Cre02g1195 972 CDD GluR_Plant 522 866 - -
Cre02g1195 972 Pfam Ligand-gated ion channel 867 897 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cre02g1195 972 Pfam Bacterial extracellular solute-binding proteins, family 3 545 644 IPR001638 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0521 Cre-Chr2:2284887 Cre02g1195 Cre-Chr2:11525470 0.00E+00 dispersed
Cre02g1195 Cre-Chr2:11525470 Cre11g2281 Cre-Chr11:34516349 3.00E-261 dispersed
Cre02g1193 Cre-Chr2:11430267 Cre02g1195 Cre-Chr2:11525470 4.40E-249 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1195 K05387 - csv:101215715 1675.22