Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1245 ATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACGGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCAGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGCGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG 618 53.07 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAGGGTSGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13198053 13198670 - CrPI670011_02g012450.1 Cre02g1245 490526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1245 205 MobiDBLite consensus disorder prediction 1 21 - -
Cre02g1245 205 MobiDBLite consensus disorder prediction 132 146 - -
Cre02g1245 205 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cre02g1245 205 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cre02g1245 205 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cre02g1245 205 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cre02g1245 205 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g1245 205 MobiDBLite consensus disorder prediction 115 154 - -
Cre02g1245 205 SUPERFAMILY Histone-fold 24 129 IPR009072 GO:0046982(InterPro)
Cre02g1245 205 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 127 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cre02g1245 205 Gene3D Histone, subunit A 15 136 IPR009072 GO:0046982(InterPro)
Cre02g1245 205 FunFam Nuclear transcription factor Y subunit B-3 16 139 - -
Cre02g1245 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1245 Cre-Chr2:13198053 Cre07g1297 Cre-Chr7:27235767 1.80E-46 dispersed
Cre02g1245 Cre-Chr2:13198053 Cre10g2172 Cre-Chr10:36251410 2.40E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53140 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1245 K08065 - csv:101219076 255.758