Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1271 ATGCAAGCTTCTCAGCTTCATAGAGGTTCACATATGTCAAAGAGATTATGTTATCAGCCCCTTCAAGAAGTGGATGCCTACTGCTTCTCCCAATTTCAATCTTTAGGTCGCCACTTATATTCCAGTGCTGGCAACCAAAGAGCTCAGTTCAATGTTCAAGACATCGGTGATCGATACTGCACTCTGGAGTCGTCCTCGGGAAGCCACGGCTATGCAGCTCACAACTCAACGTCGACTGTCACTTTCTCACCCAATGGGAGTCCAGTATCGCAACAGGATTCTCGCTCAAATCCTTCTGATCAGCATAATTCCCCTGATAATACATATGGTTCTTCAGTAAGTGGATCCAGCATAACCAATGATATTAGTGATTTTAGGCACAAACTACTGGAATTGGAAACTGTGATGCTTGGTCCTGATTCTGATGTTAGTGATAGTTTTGATAGTATCTACCCGGAGGGAACAGACAATCCAGAGATGGGAACTTGGGGACAAGCGGTGGATGCTATTACTAAAAGAAACTTAAAAAAGATCCTGATAGCTTGTGCTAAAGCTGTATCAGATAATGATGCGTTGATGGCACAATGGCTTATGGATGAGTTGCGAAAGATGGTGTCGGTTTGCGGTGAACCGATGCAGAGGTTGGGAGCGTATATGCTGGAGGGGCTGGTTGCACGGTTAGCCTCCTCGGGCAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGAGCGGAGCTCCTCTCATATATGCACCTTCTTTATGAGGTTTGCCCGTACTTCAAATTTGGATACATGTCAGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATCGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGGCCACCTCACATTCGTATAACCGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATCGTTGGGAAGAGACTTTCCAAGTTAGCGAAGTTATTTAATGTGCCATTTGAGTTTCACTCTGCTGCCATTTCTGGCTGTGATGTTCAGCAAAATAATCTGGGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCATTCATGCTACACCATATGCCGGATGAGAGCGTAAGCACCGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTCGTGACACTTGTTGAACAAGAATCCAACACAAACACCGCTGCATTCTATCCCCGGTTCATCGAGACACTGGATTACTACAATGCCATGTTTGAATCAATTGACGTTACTCTTCCAAGACAGCACAAGGAGCGAATTAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCCGAGAGAGTGGAACGACATGAGCTACTCGGAAAGTGGAGACTGCGATTTGCAATGGCAGGATTTACACCTTACCCATTAAGCTCTTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGAAATGTATTGCCAAGACAAGAACTTTCCTTGCTTGGCTGGGCTATAGTTGAATTCTGCATCACCACCAAGATGCCAGCTGAAAACTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGACGATCTTCTTGGGTCTGGAGCGGTAAAGAGAGTTTATAGGGCATTCGATCAGGAGGAAGGAATAGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTATTGGGGATCCAGTGTTCATCAACCGCTTGAGGTCTGAGGTTCAGCTGCTGAGTACTTTAAACAACAAATATATCATTGTTTGTTACAGTGTTTGGAATGACGACGAGCGTAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAAAAATGGTCAAAGCAAGTACTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGACCTCAACTGCAGTAACATATTTGTCAATGGGAACATTGGCCAGGTTAAAATAGGCGATCTAGGGTTTGCAGCTATAGTCGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAGGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCGATGTGTTTGCTTGAGATGGTTACGATGGAGATACCATACAGTGAATGTGATAGTGTTGCCAAGATATACAAGAAGGTCACAACTGGAATAAAGCCCCAAGCAATATCCAAAGTGACTGATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAGCCAAGGGCAAGACCTTCCGCTTCTGAACTTCTCAAAGATCCATTCTTTGACGAAGTGAGGGATGAAGATTCTGAACAGAGTTATTAA 2517 44.26 MQASQLHRGSHMSKRLCYQPLQEVDAYCFSQFQSLGRHLYSSAGNQRAQFNVQDIGDRYCTLESSSGSHGYAAHNSTSTVTFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSSVSGSSITNDISDFRHKLLELETVMLGPDSDVSDSFDSIYPEGTDNPEMGTWGQAVDAITKRNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCDVQQNNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRNVLPRQELSLLGWAIVEFCITTKMPAENSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKRVYRAFDQEEGIEVAWNQVRLRNFIGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDERNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQAISKVTDDEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQSY 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13970041 13977783 + CrPI670011_02g012710.1 Cre02g1271 490552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1271 838 ProSiteProfiles GRAS family profile. 166 544 IPR005202 -
Cre02g1271 838 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 555 828 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cre02g1271 838 Pfam Protein kinase domain 572 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1271 838 Gene3D Phosphorylase Kinase; domain 1 553 649 - -
Cre02g1271 838 Pfam GRAS domain family 175 533 IPR005202 -
Cre02g1271 838 MobiDBLite consensus disorder prediction 66 115 - -
Cre02g1271 838 FunFam Probable serine/threonine-protein kinase WNK1 553 649 - -
Cre02g1271 838 ProSiteProfiles Protein kinase domain profile. 568 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1271 838 FunFam probable serine/threonine-protein kinase WNK9 651 832 - -
Cre02g1271 838 SUPERFAMILY Protein kinase-like (PK-like) 561 827 IPR011009 -
Cre02g1271 838 CDD STKc_WNK 566 826 - -
Cre02g1271 838 Gene3D Transferase(Phosphotransferase) domain 1 651 832 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1271 Cre-Chr2:13970041 Cre10g0686 Cre-Chr10:6513436 5.60E-171 dispersed
Cre02g1271 Cre-Chr2:13970041 Cre02g1958 Cre-Chr2:32971515 1.20E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53143 PF03514 GRAS 4.10E-125 CL0063 Cre TF
63865 PF03514 GRAS 4.10E-125 CL0063 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1271 K27748 - csv:101221914 1006.9