Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g1271 | ATGCAAGCTTCTCAGCTTCATAGAGGTTCACATATGTCAAAGAGATTATGTTATCAGCCCCTTCAAGAAGTGGATGCCTACTGCTTCTCCCAATTTCAATCTTTAGGTCGCCACTTATATTCCAGTGCTGGCAACCAAAGAGCTCAGTTCAATGTTCAAGACATCGGTGATCGATACTGCACTCTGGAGTCGTCCTCGGGAAGCCACGGCTATGCAGCTCACAACTCAACGTCGACTGTCACTTTCTCACCCAATGGGAGTCCAGTATCGCAACAGGATTCTCGCTCAAATCCTTCTGATCAGCATAATTCCCCTGATAATACATATGGTTCTTCAGTAAGTGGATCCAGCATAACCAATGATATTAGTGATTTTAGGCACAAACTACTGGAATTGGAAACTGTGATGCTTGGTCCTGATTCTGATGTTAGTGATAGTTTTGATAGTATCTACCCGGAGGGAACAGACAATCCAGAGATGGGAACTTGGGGACAAGCGGTGGATGCTATTACTAAAAGAAACTTAAAAAAGATCCTGATAGCTTGTGCTAAAGCTGTATCAGATAATGATGCGTTGATGGCACAATGGCTTATGGATGAGTTGCGAAAGATGGTGTCGGTTTGCGGTGAACCGATGCAGAGGTTGGGAGCGTATATGCTGGAGGGGCTGGTTGCACGGTTAGCCTCCTCGGGCAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGAGCGGAGCTCCTCTCATATATGCACCTTCTTTATGAGGTTTGCCCGTACTTCAAATTTGGATACATGTCAGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATCGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGGCCACCTCACATTCGTATAACCGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATCGTTGGGAAGAGACTTTCCAAGTTAGCGAAGTTATTTAATGTGCCATTTGAGTTTCACTCTGCTGCCATTTCTGGCTGTGATGTTCAGCAAAATAATCTGGGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCATTCATGCTACACCATATGCCGGATGAGAGCGTAAGCACCGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTCGTGACACTTGTTGAACAAGAATCCAACACAAACACCGCTGCATTCTATCCCCGGTTCATCGAGACACTGGATTACTACAATGCCATGTTTGAATCAATTGACGTTACTCTTCCAAGACAGCACAAGGAGCGAATTAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCCGAGAGAGTGGAACGACATGAGCTACTCGGAAAGTGGAGACTGCGATTTGCAATGGCAGGATTTACACCTTACCCATTAAGCTCTTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGAAATGTATTGCCAAGACAAGAACTTTCCTTGCTTGGCTGGGCTATAGTTGAATTCTGCATCACCACCAAGATGCCAGCTGAAAACTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGACGATCTTCTTGGGTCTGGAGCGGTAAAGAGAGTTTATAGGGCATTCGATCAGGAGGAAGGAATAGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTATTGGGGATCCAGTGTTCATCAACCGCTTGAGGTCTGAGGTTCAGCTGCTGAGTACTTTAAACAACAAATATATCATTGTTTGTTACAGTGTTTGGAATGACGACGAGCGTAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAAAAATGGTCAAAGCAAGTACTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGACCTCAACTGCAGTAACATATTTGTCAATGGGAACATTGGCCAGGTTAAAATAGGCGATCTAGGGTTTGCAGCTATAGTCGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAGGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCGATGTGTTTGCTTGAGATGGTTACGATGGAGATACCATACAGTGAATGTGATAGTGTTGCCAAGATATACAAGAAGGTCACAACTGGAATAAAGCCCCAAGCAATATCCAAAGTGACTGATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAGCCAAGGGCAAGACCTTCCGCTTCTGAACTTCTCAAAGATCCATTCTTTGACGAAGTGAGGGATGAAGATTCTGAACAGAGTTATTAA | 2517 | 44.26 | MQASQLHRGSHMSKRLCYQPLQEVDAYCFSQFQSLGRHLYSSAGNQRAQFNVQDIGDRYCTLESSSGSHGYAAHNSTSTVTFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSSVSGSSITNDISDFRHKLLELETVMLGPDSDVSDSFDSIYPEGTDNPEMGTWGQAVDAITKRNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCDVQQNNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRNVLPRQELSLLGWAIVEFCITTKMPAENSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKRVYRAFDQEEGIEVAWNQVRLRNFIGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDERNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQAISKVTDDEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQSY | 838 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 13970041 | 13977783 | + | CrPI670011_02g012710.1 | Cre02g1271 | 490552 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g1271 | 838 | ProSiteProfiles | GRAS family profile. | 166 | 544 | IPR005202 | - | |
Cre02g1271 | 838 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 555 | 828 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Cre02g1271 | 838 | Pfam | Protein kinase domain | 572 | 826 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre02g1271 | 838 | Gene3D | Phosphorylase Kinase; domain 1 | 553 | 649 | - | - | |
Cre02g1271 | 838 | Pfam | GRAS domain family | 175 | 533 | IPR005202 | - | |
Cre02g1271 | 838 | MobiDBLite | consensus disorder prediction | 66 | 115 | - | - | |
Cre02g1271 | 838 | FunFam | Probable serine/threonine-protein kinase WNK1 | 553 | 649 | - | - | |
Cre02g1271 | 838 | ProSiteProfiles | Protein kinase domain profile. | 568 | 826 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre02g1271 | 838 | FunFam | probable serine/threonine-protein kinase WNK9 | 651 | 832 | - | - | |
Cre02g1271 | 838 | SUPERFAMILY | Protein kinase-like (PK-like) | 561 | 827 | IPR011009 | - | |
Cre02g1271 | 838 | CDD | STKc_WNK | 566 | 826 | - | - | |
Cre02g1271 | 838 | Gene3D | Transferase(Phosphotransferase) domain 1 | 651 | 832 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1271 | Cre-Chr2:13970041 | Cre10g0686 | Cre-Chr10:6513436 | 5.60E-171 | dispersed | |
Cre02g1271 | Cre-Chr2:13970041 | Cre02g1958 | Cre-Chr2:32971515 | 1.20E-93 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53143 | PF03514 | GRAS | 4.10E-125 | CL0063 | Cre | TF | |
63865 | PF03514 | GRAS | 4.10E-125 | CL0063 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g1271 | K27748 | - | csv:101221914 | 1006.9 |