Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1304 ATGATTGAGAAAATGGCGGACGACGAATTCTCAGACTGTTTTCTCCAAATCCCGCTCACCGGATCCAACCCTTCTCTTCTCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGTTGTCGCCAAAGACGTTGATGGCGACGAACCGATTCGTGTGTGAAATATGCGGAAAAGGGTTTCAGAGAGACCAAAATTTGCAACTACACAGACGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTGTGTCCTGAGAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATACGCTGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATAACTCACAGAGCATTCTGCGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGCGGGAAGCTGCAGAGATGATGAAACAGGGTTATTCATGGCTCAACAGTTGGGTTCAATTTTCAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGCAGTGGGGTTTCCTTAAGAAGCAATAATAATTACAACAATCTTCAAATGATTGGAGGGATGATGATGAATAATAATTCAGGAGGAGTAATGTACTGCGAAGATCCACTTTGGGGAAGCTCAGTACAAATGGGTGATTATAATCAAAATCAGGGGTTATTGATGAGTAATGGGGGAGGAGTTTCTTCATTATACAGCCATCAATTACAACAACTGAATCAAACCCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCTACTACATCTGCCCCATCACTACTACTACTACAACAACAGGGGTTTTTGTTCAATAATAATGGGACTCAGTATTGTAATTCTTCTAGTACTACAAATCCAATTGTTGTTGTTGAGAATGGGAATAATGAGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAAATTGAGTGTGGAAGTGGAAGTGGGACAATGGGACCAGGAACAGGAGCAGGGGAGACAAGGGATTTTCTCGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG 1308 41.51 MIEKMADDEFSDCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTTISNNFNYNLMGAGSCRDDETGLFMAQQLGSIFKPISVKEATMAISSSGVSLRSNNNYNNLQMIGGMMMNNNSGGVMYCEDPLWGSSVQMGDYNQNQGLLMSNGGGVSSLYSHQLQQLNQTQMGNMSATALLQKAAEIGPTSSTTSAPSLLLLQQQGFLFNNNGTQYCNSSSTTNPIVVVENGNNEMYTAKRRRTESEIECGSGSGTMGPGTGAGETRDFLGVGAKTICHASASINGWI 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15680288 15681785 + CrPI670011_02g013040.1 Cre02g1304 490585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1304 435 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Cre02g1304 435 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cre02g1304 435 SMART c2h2final6 133 153 IPR013087 -
Cre02g1304 435 SMART c2h2final6 57 79 IPR013087 -
Cre02g1304 435 FunFam protein indeterminate-domain 12-like 36 104 - -
Cre02g1304 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cre02g1304 435 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cre02g1304 435 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
Cre02g1304 435 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 423 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre02g1304 435 Gene3D Classic Zinc Finger 90 181 - -
Cre02g1304 435 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 159 197 - -
Cre02g1304 435 Gene3D Classic Zinc Finger 53 80 - -
Cre02g1304 435 MobiDBLite consensus disorder prediction 389 409 - -
Cre02g1304 435 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Cre02g1304 435 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1304 Cre-Chr2:15680288 Cre04g0982 Cre-Chr4:28428145 5.30E-88 dispersed
Cre09g0582 Cre-Chr9:5495427 Cre02g1304 Cre-Chr2:15680288 4.40E-83 transposed
Cre09g0697 Cre-Chr9:6684159 Cre02g1304 Cre-Chr2:15680288 4.30E-89 transposed
Cre02g0571 Cre-Chr2:2777064 Cre02g1304 Cre-Chr2:15680288 1.90E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53146 PF00096 zf-C2H2 0.0018 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1304 K25870 - csv:101211656 645.195