Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1369 ATGGATAAACCGAGCCCAAATCAACGGCCATCATGGAATTTGCTCCATTTTACATGGGGTATGCAATACGGTTGGGTAGGAGGCATATTTATTGGCAAATGGGGACTTTATCCTCAACTGTCATCCTTTCTGCACACCACCTGTTCGATCAAAGTCCTCACACAGCTTTTGGCTCTGAAATTTCACCCTGAAAGCCAGAAATCCTTTCTCGGTTTTCAGAATTCACTTGAAAGGTATTGTCTTTTGCTTCCTGATTGTCTGCAACTCTCTTCTGCATTTTCTGTATTTGTGTTGAGCTTTGCTGAGACATTGATAATGGAGGAGAAGCGAGGTATGAGCAGCAACAGGCCTACCGACAAATGGATGGCATTTGACAGAGAACCAAACACAACAAACTCTCCTGGAAATGAATCAAAAGAAGACAGAAAAAGCTGGCAATCTTCTTCCAAACGGGCAATATCTACAGAAGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGCAGTTTCAAGGCCATCGTGGGGAGAGCATCAGGTGAAGGAGGGGGCAGCAAAAGATCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTGGCAAGGAAACCTCTGGAGTTTTCCCAAGGGTATCACAAGAGTTGAAGGACGCTCTGGCTTCTTTAGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGACTGCCCCATCATGTATGCGAGCAGTGGCTTCTTTGGCATGACTGGTTATGCTTCAGAGGAAGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAAGAAGAAGTTGACAAAATCCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACACCTATCAAGGATGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAATACACAGAAGGCATAAATGATAAAGCATTACGACCGAATGGGTTGCCAAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAATGGATTCCATCACAGAGGTCGTTCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACACTACCAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCTTCCAAAGTCGGTTGAAGCTGCAAATGATACACCGGGTAGACAAACTCCTCAACAGGACCTCAAAGATGATGGGTTAGGCAAGAAACCTAGGTTATCAAGTCGAGTTTCTCTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCTTTGAACCAGAAATTTTGATGTCCGACGAAGTAGAACGGACTGATAGTTGGGACCGTGCTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGAGAATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACGGAATATACTCGTGAGGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCACGTGGAACCTTTGCAAAACCGCCTTTCTGAGAACGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTTCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCACTTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAATTCTTCTTGGAGTGCTATACAGAAGATTATCCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTCGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGACTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACGCTTGCTGACTTCGATTTATCACTTGTAACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCATGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACGCAATCAAATTCTTTTGTTGGAACCGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTATTATATGAGATGCTTTATGGTCGCACGCCTTTCAGAGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACTTTCCCAAGTAGCATTCAGGTGAGTCTTGCAGCAAGGCAGCTGATCAATGCATTGCTACAAAGAGACCCCGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCATTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCACCTAACTGGAAAAGATGGAACAACCAAGAACATAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATATGGATTTCTTCTGA 3087 43.47 MDKPSPNQRPSWNLLHFTWGMQYGWVGGIFIGKWGLYPQLSSFLHTTCSIKVLTQLLALKFHPESQKSFLGFQNSLERYCLLLPDCLQLSSAFSVFVLSFAETLIMEEKRGMSSNRPTDKWMAFDREPNTTNSPGNESKEDRKSWQSSSKRAISTEANIAERAAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFGKETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQEEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMDSITEVVQTVKNPRSHNRAMSHDTTRKKEDLEKFNLDYVLPKSVEAANDTPGRQTPQQDLKDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTAFEPEILMSDEVERTDSWDRAEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSENAELQSAKLVKATAENVDEAVRELPDANLRPEDLWALHSQPVFPRPHKKHNSSWSAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDGTTKNINWEDDGVLSSMDMDFF 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21989427 22003629 - CrPI670011_02g013690.1 Cre02g1369 490650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1369 1028 SMART pac_2 569 611 IPR001610 -
Cre02g1369 1028 SMART pac_2 297 339 IPR001610 -
Cre02g1369 1028 SMART serkin_6 693 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1369 1028 CDD PAS 247 336 IPR000014 -
Cre02g1369 1028 MobiDBLite consensus disorder prediction 194 214 - -
Cre02g1369 1028 ProSiteProfiles Protein kinase domain profile. 693 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1369 1028 Gene3D Transferase(Phosphotransferase) domain 1 777 996 - -
Cre02g1369 1028 SUPERFAMILY Protein kinase-like (PK-like) 670 1005 IPR011009 -
Cre02g1369 1028 PANTHER FLIPPASE KINASE 1-RELATED 644 999 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre02g1369 1028 SUPERFAMILY PYP-like sensor domain (PAS domain) 241 333 IPR035965 -
Cre02g1369 1028 SMART pas_2 222 291 IPR000014 -
Cre02g1369 1028 SMART pas_2 494 563 IPR000014 -
Cre02g1369 1028 ProSiteProfiles PAS repeat profile. 492 565 IPR000014 -
Cre02g1369 1028 CDD PAS 507 607 IPR000014 -
Cre02g1369 1028 Gene3D PAS domain 234 404 - -
Cre02g1369 1028 FunFam Putative LOV domain-containing protein 777 992 - -
Cre02g1369 1028 Gene3D PAS domain 481 645 - -
Cre02g1369 1028 ProSiteProfiles PAC domain profile. 566 620 IPR000700 -
Cre02g1369 1028 ProSiteProfiles PAS repeat profile. 220 293 IPR000014 -
Cre02g1369 1028 FunFam LOV domain-containing protein 692 776 - -
Cre02g1369 1028 SUPERFAMILY PYP-like sensor domain (PAS domain) 508 607 IPR035965 -
Cre02g1369 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g1369 1028 NCBIfam PAS domain S-box protein 247 337 IPR000014 -
Cre02g1369 1028 NCBIfam PAS domain S-box protein 517 607 IPR000014 -
Cre02g1369 1028 FunFam LOV domain-containing protein 481 645 - -
Cre02g1369 1028 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524(InterPro)
Cre02g1369 1028 MobiDBLite consensus disorder prediction 413 439 - -
Cre02g1369 1028 FunFam Putative LOV domain-containing protein 234 390 - -
Cre02g1369 1028 ProSiteProfiles PAC domain profile. 294 348 IPR000700 -
Cre02g1369 1028 CDD STKc_phototropin_like 691 999 - -
Cre02g1369 1028 MobiDBLite consensus disorder prediction 113 151 - -
Cre02g1369 1028 MobiDBLite consensus disorder prediction 184 214 - -
Cre02g1369 1028 Pfam Protein kinase domain 696 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1369 1028 Gene3D Phosphorylase Kinase; domain 1 692 776 - -
Cre02g1369 1028 Pfam PAS domain 515 607 IPR000014 -
Cre02g1369 1028 Pfam PAS domain 241 337 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1369 Cre-Chr2:21989427 Cre10g1529 Cre-Chr10:29217918 4.10E-99 dispersed
Cre02g2374 Cre-Chr2:37143370 Cre02g1369 Cre-Chr2:21989427 7.9e-313 transposed
Cre05g2327 Cre-Chr5:34849497 Cre02g1369 Cre-Chr2:21989427 1.10E-47 transposed
Cre06g1708 Cre-Chr6:14433638 Cre02g1369 Cre-Chr2:21989427 3.00E-18 transposed
Cre02g0647 Cre-Chr2:3412628 Cre02g1369 Cre-Chr2:21989427 1.60E-254 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63866 PF00069 Pkinase 1.10E-61 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1369 K20715 - csv:101215355 1744.17