Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1378 GATCGTGAGAGAGATGGAAGCCCTTTAGGAAACATCTCCCGATTCTTGCGTAGTAGTCCTTTAGAAATGAGTGGTGGCCGGCAGCGGACCCTTGGGGTTGGGGTTCAACATGTTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCCTTTTATTATGCAGTTCAGGGCGATGGTGATAACCACTCTGGGGGGAATATCTTTTGGGCAGATGCAACGTCTAGAATGAATTATACTTACTTTGGTGATACCATTGTATTGGATACAACATTTAGAACAAATCAGTATGGGGTGCCTCTTGCTGCCTTTACAGGGTTTAATCATCATGGTCAGCCAGTGTTGTTTGGATGTGCATTGATTCTTTATGAGTCTGAATCCTCATTCATTTGGCTCTTCCAAACTTGGCTTCAAGCAATGTCTGGACGTCAACCAATTTCCATTACAACTGACCCAGATAGGCTTATCCAGGTTGCCGTTGCACAGGTTCTTCCAGGTACCCGCCATCGTTTTTGCAAGTGGGCTATATTCAGAGAAACACAGGAGAAGTTGTCTCATCTTTGTCAATCTCATCCTACTTTTGAAACTGAATTTAGAAAATGTGTTAATGAGGCTGAGACAATTGAAGAATTTGAGTCTTGTTGGGAAGCCCTTCTGAATAGATATTACATTATGGACAATGACTGGCTTCAGTTAATGTATAGTGCTAGACAACAGTGGGTACCCGTCTACATGAGGGACACTTTCTTTGGAGAAATGTCAATAAATGAGAGCTATAAAAGTTTGAATTTGTTTTTTGATGGATATGTTACTGCATCCACCTCAATACAGATGTTGGTTAGACAGTATGAAAAGGCCATGGCAAGCTGGCATGAAAAAGAATTAAAAGCTGATTATGATACAATTAACTCTATGCCTGTTCTGAAGACACCATCTCCTATGGAAAAACAGGCTGCAGATTTATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACGCTTGCCAATCCTGCAACCAAAATTGATGACACAGGAACCGTTGCCACTTATCGAGTAGCAAAATTTGGGGAAGACCATAAAGCACATGCTGTTAGTTTTAATTCATTAGAGTTGAAAGCTAATTGCAGCTGTCAACTGTTTGAATATTCAGGAATAATTTGCAGGCATATATTAGCAGTTTTTAGGGCAAAAAATGTTCTTACACTTCCTTCCCAATATGTATTGAAACGGTGGACCAGAAATGCCAGAAATGGAGCTGTAATAGATGACCATAATTCTGAATTACCAAATGAAGCTGGAGATTCTTCGACTGTTAGATACAACAATCTTCGTCAAGAGGCAATTAAGTATGTTGAGGAAGGAGCAAAGTCAATTCATATTTATAACGTGGCTATGGATGCCCTAAAAGAGGCCTCTAGAAAGGTTGCTGCTGTGAAGAATCAGGGCCCTGGAGCGACTAACGGTGATATTATGGCCAATGGAGTTGGGGCATTGGTTGCAACAGAAGAGGATCAGACAACAACCTATCAATCGGTGGAACAAAAGGAGAAGAAAATTCGTGAGCTTTCTGCAGAGTTGGAAAAAACAAATCAACGCTGTGAAGTGTATAGAGCAAATCTCCTAGCTGTTTTAAGGGACATGGAAGAGCAGAAGTTGAAGTTATCTGTGAAGGTCCAAAATGCAAGGCTTAGTTTGAAAGAGTGA 1716 40.85 DRERDGSPLGNISRFLRSSPLEMSGGRQRTLGVGVQHVLDYLKRMQAENPAFYYAVQGDGDNHSGGNIFWADATSRMNYTYFGDTIVLDTTFRTNQYGVPLAAFTGFNHHGQPVLFGCALILYESESSFIWLFQTWLQAMSGRQPISITTDPDRLIQVAVAQVLPGTRHRFCKWAIFRETQEKLSHLCQSHPTFETEFRKCVNEAETIEEFESCWEALLNRYYIMDNDWLQLMYSARQQWVPVYMRDTFFGEMSINESYKSLNLFFDGYVTASTSIQMLVRQYEKAMASWHEKELKADYDTINSMPVLKTPSPMEKQAADLYSRRIFRKFQEELVETLANPATKIDDTGTVATYRVAKFGEDHKAHAVSFNSLELKANCSCQLFEYSGIICRHILAVFRAKNVLTLPSQYVLKRWTRNARNGAVIDDHNSELPNEAGDSSTVRYNNLRQEAIKYVEEGAKSIHIYNVAMDALKEASRKVAAVKNQGPGATNGDIMANGVGALVATEEDQTTTYQSVEQKEKKIRELSAELEKTNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22389221 22393040 + CrPI670011_02g013780.1 Cre02g1378 490659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1378 571 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 483 IPR031052 GO:0006355(InterPro)
Cre02g1378 571 Pfam MULE transposase domain 86 177 IPR018289 -
Cre02g1378 571 Coils Coil 513 543 - -
Cre02g1378 571 SMART 26again6 377 404 IPR006564 GO:0008270(InterPro)
Cre02g1378 571 Coils Coil 465 485 - -
Cre02g1378 571 ProSiteProfiles Zinc finger SWIM-type profile. 364 402 IPR007527 GO:0008270(InterPro)
Cre02g1378 571 Coils Coil 548 568 - -
Cre02g1378 571 Pfam SWIM zinc finger 374 402 IPR007527 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1378 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1378 Cre-Chr2:22389221 Cre03g1694 Cre-Chr3:33689192 1.10E-104 dispersed
Cre05g0679 Cre-Chr5:5979882 Cre02g1378 Cre-Chr2:22389221 6.80E-92 transposed
Cre02g0653 Cre-Chr2:3462888 Cre02g1378 Cre-Chr2:22389221 6.30E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365