Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1390 ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCATGTTGTTGGCATCCATCTCTCGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCAACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGGCCGTAG 471 46.07 MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFNKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFWP 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23192990 23193544 - CrPI670011_02g013900.1 Cre02g1390 490671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1390 156 SMART ring_2 99 140 IPR001841 -
Cre02g1390 156 SUPERFAMILY RING/U-box 86 147 - -
Cre02g1390 156 PANTHER - 1 155 IPR044249 -
Cre02g1390 156 Pfam Ring finger domain 98 141 IPR001841 -
Cre02g1390 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 146 IPR013083 -
Cre02g1390 156 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0637 Cre-Chr2:3302224 Cre02g1390 Cre-Chr2:23192990 2.50E-54 dispersed
Cre02g1390 Cre-Chr2:23192990 Cre09g2372 Cre-Chr9:43046915 1.00E-09 dispersed
Cre02g1390 Cre-Chr2:23192990 Cre06g1112 Cre-Chr6:5029852 1.30E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1390 K16285 - csv:101216645 318.161