Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g1390 | ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCATGTTGTTGGCATCCATCTCTCGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCAACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGGCCGTAG | 471 | 46.07 | MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFNKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFWP | 156 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23192990 | 23193544 | - | CrPI670011_02g013900.1 | Cre02g1390 | 490671 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g1390 | 156 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
Cre02g1390 | 156 | SUPERFAMILY | RING/U-box | 86 | 147 | - | - | |
Cre02g1390 | 156 | PANTHER | - | 1 | 155 | IPR044249 | - | |
Cre02g1390 | 156 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
Cre02g1390 | 156 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 146 | IPR013083 | - | |
Cre02g1390 | 156 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0637 | Cre-Chr2:3302224 | Cre02g1390 | Cre-Chr2:23192990 | 2.50E-54 | dispersed | |
Cre02g1390 | Cre-Chr2:23192990 | Cre09g2372 | Cre-Chr9:43046915 | 1.00E-09 | dispersed | |
Cre02g1390 | Cre-Chr2:23192990 | Cre06g1112 | Cre-Chr6:5029852 | 1.30E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g1390 | K16285 | - | csv:101216645 | 318.161 |