Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1391 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTGTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACACGAACGCTGCTGTGTGAAAGATGCCATTCACAACCCTCCACGGTAAGGTGTATTGATGAGAGGCTTTCTCTCTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCCTCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATATGGTCCTTTGTTTTGGATGTTCCCTCTGTAAATGATGCTTATGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGATTTGATGGGCACCTGGAGCCTTTCAGAGAACAACGCCGGTCAAAGAATGCCTGGGTCAACTGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGGTTGGATCATCTTCACTCATTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATGTGGCTTTACCTAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGTGGTGAGGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCATCGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAACGGTGCCTCTGCTGACTCAGTGATGAGTGCTAAAACCGAACCGGTTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCGATGCTCCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCGCTGAAAGTTCCTTCCCATCTTCTGATCGTAATAGTGCTGTTCTGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCGACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.49 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSTVRCIDERLSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDAYEKELGLMSIAETDLMGTWSLSENNAGQRMPGSTEASDVCSREKSNALVGSSSLIDFGSRPHTSDQPVELANVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVCHSAVAAEGSSIGVVKPMQPACSNGASADSVMSAKTEPVLCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGAESSFPSSDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23341213 23344286 - CrPI670011_02g013910.1 Cre02g1391 490672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1391 417 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cre02g1391 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 407 - -
Cre02g1391 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cre02g1391 417 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cre02g1391 417 Pfam CCT motif 360 402 IPR010402 GO:0005515(InterPro)
Cre02g1391 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515(InterPro)
Cre02g1391 417 CDD Bbox1_BBX-like 47 91 IPR049808 -
Cre02g1391 417 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1391 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0639 Cre-Chr2:3325642 Cre02g1391 Cre-Chr2:23341213 3.70E-122 dispersed
Cre02g1172 Cre-Chr2:10905195 Cre02g1391 Cre-Chr2:23341213 2.60E-33 dispersed
Cre02g1391 Cre-Chr2:23341213 Cre05g2411 Cre-Chr5:35602804 1.10E-13 dispersed
Cre02g1391 Cre-Chr2:23341213 Cre11g1658 Cre-Chr11:27879163 1.30E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1331 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.8e-41 167.2
Cre08g1331 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.9e-84 308.9
Cre06g2174 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 3.6e-58 222.6
Cre06g2174 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.0e-68 255.4
Cre08g1331 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.3e-54 208.8
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.2 1.1e-89 327.4
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.8e-89 326.6
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.7e-87 320.1
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.0 5.5e-86 315.1
Cre02g1391 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.7e-87 320.1
Cre02g0639 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.0 5.5e-86 315.1
Cre02g0833 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 55.2 1.8e-51 200.3
Cre11g0890 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 1.5e-42 170.6
Cre07g1378 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 3.4e-76 282.3
Cre07g1192 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.0e-55 213.4
Cre04g1625 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 6.2e-48 187.6
Cre07g1192 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.0e-58 220.7
Cre04g1625 . 1 107 C2C2-CO-like Transcription Factor Family AT4G38960 82.2 1.3e-48 189.9
Cre02g0833 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.9 1.7e-56 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53152 PF06203 CCT 6.50E-16 CL0281 Cre TF