Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1391 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTGTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACACGAACGCTGCTGTGTGAAAGATGCCATTCACAACCCTCCACGGTAAGGTGTATTGATGAGAGGCTTTCTCTCTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCCTCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATATGGTCCTTTGTTTTGGATGTTCCCTCTGTAAATGATGCTTATGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGATTTGATGGGCACCTGGAGCCTTTCAGAGAACAACGCCGGTCAAAGAATGCCTGGGTCAACTGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGGTTGGATCATCTTCACTCATTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATGTGGCTTTACCTAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGTGGTGAGGACGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCATCGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAACGGTGCCTCTGCTGACTCAGTGATGAGTGCTAAAACCGAACCGGTTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCGATGCTCCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCGCTGAAAGTTCCTTCCCATCTTCTGATCGTAATAGTGCTGTTCTGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCGACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.49 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSTVRCIDERLSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDAYEKELGLMSIAETDLMGTWSLSENNAGQRMPGSTEASDVCSREKSNALVGSSSLIDFGSRPHTSDQPVELANVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVCHSAVAAEGSSIGVVKPMQPACSNGASADSVMSAKTEPVLCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGAESSFPSSDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23341213 23344286 - CrPI670011_02g013910.1 Cre02g1391 490672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1391 417 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cre02g1391 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 407 - -
Cre02g1391 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cre02g1391 417 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cre02g1391 417 Pfam CCT motif 360 402 IPR010402 GO:0005515(InterPro)
Cre02g1391 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515(InterPro)
Cre02g1391 417 CDD Bbox1_BBX-like 47 91 IPR049808 -
Cre02g1391 417 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0639 Cre-Chr2:3325642 Cre02g1391 Cre-Chr2:23341213 3.70E-122 dispersed
Cre02g1172 Cre-Chr2:10905195 Cre02g1391 Cre-Chr2:23341213 2.60E-33 dispersed
Cre02g1391 Cre-Chr2:23341213 Cre05g2411 Cre-Chr5:35602804 1.10E-13 dispersed
Cre02g1391 Cre-Chr2:23341213 Cre11g1658 Cre-Chr11:27879163 1.30E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53152 PF06203 CCT 6.50E-16 CL0281 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1391 - - - 0.0