Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1420 ATGGAGAAGACGATGATGAGTTTAAATCATCTGTTTGTGACGACATTCATCGGGTGTTTGTCCACTTTCGTGTTGATTCCGAGCATTACAGACCTAACAATGGCGGCTCTGTGTCCTCAACAGGATCACTGCTCCCTTGCCATTTATCTCTCTGGTCTTCAGCAGGTGATTGTAGGGGTTGGAGCAATGGTGATTACACCAGTAATTGGGAATTTATCCGACAAATATGGAAGGAAAACAATGCTGACTCTCCCTATGACATTTTCAATCATACCACTCACCATAATGGCATACAGAAGAACTACCAACTTCTTCTATGCATTCTACATCATGAAAACTCTCACAGACATGGTTTCAGAAGGCACTACAGTTTCACTTGCTCTTGCTTATGTGGCAGACAAAACTTCAGAGGAACAAAGGATTTCAGCGTTTGGAATCCTATCTGGGATCAAAGCTGTAGGTTATGTATGTGGAACCTTTTCAGCTCGACTCCTTCCCATTGCTACAGTGTTTCAGGTGGCAACTTTCATGTCTGTGCTTGCTGTAGTGTACATGAGGATTTTTCTCAAGGAAAGCATTCCGGCTCGTAACGAGTTGACTCAGCCAATCTTCGATGGTGATGATGAAAATGGGCCACAATTGACTACAAGAAACCAGTTATTGACAGGGATTTCTTCTGTTAGAGATGTTATCTGCTTGATCACGAGTAGCACAACATTTTCACAAATAGCAAGAGTTTCCTTCTTCAATAGTCTAGCAGAGAAGGGGATGCAAGCATCACTATCGTTTTTCTTAAAGGCCCGTTTTCACTTCGACAAAAACCAGTTTGCTGACTTAATGATAATTGATGGTGTTGTTGGGGCCACTTCACAGCTTCTTTTGATGCCCGTTTTGACATCAGCTATAAGACAGGAGAAGTTGCTTTCAATAGGGTTGTGGGCAATCTTTGTAAATATGCTACTTTACAGCATTGCTTGGACCGTTTGGGTACCTTATGCTTCAAGAGCACTTTCAATTTTTACAGTTATCGTCAGTCCAATAATATTCAACATTGCATCAAAACAAGTTGGACCAAGTGAGCAGGGGAAGGCCCAAGGATGCATCTCAGGCATCAATTCCCTTGCCAACATTGTATCTCCATTTCTTTTCAGCCCCTTGATAGCTCTTTTCCTCTCCAAGGATGCACCATTTAACTTCCCTGGCTTCAGTATTTTGTGCATTGGGCTCACTTCGTTGGTTGGGTTCACTCTAAGCCTGATGATCCGAGTAGATCCCGTCACTTTCATTCAGAAAAGCAACAACTTAGATCCCATTTGA 1317 42.44 MEKTMMSLNHLFVTTFIGCLSTFVLIPSITDLTMAALCPQQDHCSLAIYLSGLQQVIVGVGAMVITPVIGNLSDKYGRKTMLTLPMTFSIIPLTIMAYRRTTNFFYAFYIMKTLTDMVSEGTTVSLALAYVADKTSEEQRISAFGILSGIKAVGYVCGTFSARLLPIATVFQVATFMSVLAVVYMRIFLKESIPARNELTQPIFDGDDENGPQLTTRNQLLTGISSVRDVICLITSSTTFSQIARVSFFNSLAEKGMQASLSFFLKARFHFDKNQFADLMIIDGVVGATSQLLLMPVLTSAIRQEKLLSIGLWAIFVNMLLYSIAWTVWVPYASRALSIFTVIVSPIIFNIASKQVGPSEQGKAQGCISGINSLANIVSPFLFSPLIALFLSKDAPFNFPGFSILCIGLTSLVGFTLSLMIRVDPVTFIQKSNNLDPI 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24770622 24774336 + CrPI670011_02g014200.1 Cre02g1420 490701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1420 438 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 8 412 - -
Cre02g1420 438 PRINTS Tetracycline resistance protein signature 364 387 IPR001958 GO:0022857(InterPro)
Cre02g1420 438 PRINTS Tetracycline resistance protein signature 51 70 IPR001958 GO:0022857(InterPro)
Cre02g1420 438 PRINTS Tetracycline resistance protein signature 144 166 IPR001958 GO:0022857(InterPro)
Cre02g1420 438 CDD MFS_SLC46_TetA_like 11 420 - -
Cre02g1420 438 Gene3D MFS general substrate transporter like domains 6 419 IPR036259 -
Cre02g1420 438 Pfam Major Facilitator Superfamily 11 197 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cre02g1420 438 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cre02g1420 438 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 426 IPR020846 GO:0022857(InterPro)
Cre02g1420 438 SUPERFAMILY MFS general substrate transporter 13 420 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1420 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1420 Cre-Chr2:24770622 Cre08g1351 Cre-Chr8:26558126 3.00E-115 dispersed
Cre02g0744 Cre-Chr2:4286039 Cre02g1420 Cre-Chr2:24770622 3.20E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g211 . . . . . Bpe12g00132 . . Cmo19g00768 . . . . Car20g00636 . . Cpe15g00610 Bhi05g01676 Tan02g0650 . . Hepe02g0405 . . Cla02g00405 Cam02g0410 Cec02g0410 Cco02g0427 Clacu02g0413 Cmu02g0409 Cre02g0744 Cone12ag1249 . . . . Csa07g00124 . Cme01g01232 Blo04g00585 Blo13g00494 Bda15g01021 Bda14g00627 Bpe15g00800 . . . . . . . Cma19g00755 . Car19g00589 Cpe16g00333 Cpe05g01357 . . . . . . . Cla02g01087 Cam02g1163 Cec02g1162 Cco02g1210 Clacu02g1155 Cmu02g1117 Cre02g1420 Lsi11g01219 . Chy01g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123