Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1421 ATGCGATTCACTTTCGACGCTTTGATGGAGCTCCGCTTATGTCCACCGCCATACGTGATCGGAGGCGGCGTTCGACTCTTCTTAAAGCCGCTTAAACGCCACGACGGCTTCCGCAGTTACCCTTTCGTGCCAAATCTGCAGGTCAAATGTACACTCACCAAACAAACCCACCGATTCCTCTCCACATTGGCCACAACCGCCGCCACCGGTGACCATTCGACGACCAATCGCTTGATTCGAAAATTTGTAGCGAGTTCTCCGAAATCGATAACTCTCAATGTTCTCTCCAATATCGTCTCCCCCCACACGGCTCAACCTGGGCTCTACTCTGTTGCTCTCACGTTGTATTCTAGAATTACTGAAGCGTCTTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTATTGCCTTCCTCGATCAAAATGGACTGTACAGTGAGTCGGAAGCCCTAATGTCCGAGACAATTTCGAAGTTAGGGTTTCAAGAAAGAAAACTTGTGAATTTCTATTCCCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTGGTAACTTCTATGCTCGCCTTCTTGAGCTTCTTTATAATTCGCCGTCAGTTTATGTTAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGACCTCAGGAAGCTGAGACTTTGGTAGAAGAAATGAGGAGCAAAGGAATTACGCCTTCTGCATATGAATATAGGTCCATTATTTACGCCTATGGAACATTGGGATTGTTTGAAGATATGCAGAGGAGTTTAAAACAGATGGAGAATGAAGATTATGCATTAGACACAATTTGTTCCAATATGGTGCTTTCTTCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAAGAATGAAAACTTCCGCGCATCTTAATTTCTCTGTTCGGACTTACAATTCTGTTTTGAAGTCATGTCCAAAGATTACATCAATGCTACAAGAGCACAAGAGCAGCGAGTTTCCCGTTTTGATCGAAGACTTAATCGCGGTTCTGGATGGTGATGAGGAGGCTTTGTTGGTTGAAGAGTTGGTGGTTGGTTCATATGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAATTGAAGTTGGATTTGCATGGTGCACATGTGATCATGTTACAGTGGATGAAGGAGATGAGACTCAACTTTGAGGATGAGAGTTGTGTGATTCCAGCACAAGTTACATTGATTTCTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTTTGATTAAAGAGATTATAGTTCGAACTGAAAGTCCGCTGAGAGTCGATCGAAGGAACACAGGTTGCTTCATCTCTAAAGGAAAAGCTGTAAAGAATTGGTTATGTTCACTACCAGAAAAAAGGGAGATTGTAGCTAATAGAATGCCATAA 1446 42.81 MRFTFDALMELRLCPPPYVIGGGVRLFLKPLKRHDGFRSYPFVPNLQVKCTLTKQTHRFLSTLATTAATGDHSTTNRLIRKFVASSPKSITLNVLSNIVSPHTAQPGLYSVALTLYSRITEASWFTWNSKLVADLIAFLDQNGLYSESEALMSETISKLGFQERKLVNFYSQLVESQSKHGSERGFGNFYARLLELLYNSPSVYVKRRAYESMVTGLCSMKRPQEAETLVEEMRSKGITPSAYEYRSIIYAYGTLGLFEDMQRSLKQMENEDYALDTICSNMVLSSYGAHNKLADMVLWLQRMKTSAHLNFSVRTYNSVLKSCPKITSMLQEHKSSEFPVLIEDLIAVLDGDEEALLVEELVVGSYVLKEVMVWDAMELKLDLHGAHVIMLQWMKEMRLNFEDESCVIPAQVTLISGSGNHSIVRGESPVKALIKEIIVRTESPLRVDRRNTGCFISKGKAVKNWLCSLPEKREIVANRMP 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24792876 24794497 - CrPI670011_02g014210.1 Cre02g1421 490702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1421 481 Gene3D Tetratricopeptide repeat domain 58 340 IPR011990 GO:0005515(InterPro)
Cre02g1421 481 PANTHER OS03G0856100 PROTEIN 71 470 - -
Cre02g1421 481 Pfam PPR repeat 209 238 IPR002885 -
Cre02g1421 481 ProSiteProfiles Smr domain profile. 381 460 IPR002625 -
Cre02g1421 481 SUPERFAMILY SMR domain-like 379 456 IPR036063 -
Cre02g1421 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Cre02g1421 481 NCBIfam pentatricopeptide repeat 209 241 IPR002885 -
Cre02g1421 481 SMART SMR_2 378 460 IPR002625 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1421 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g162 . . . . . Bpe12g00121 . . Cmo19g00747 Cmo11g01739 Cma02g00259 Cma20g00750 . . Sed05g2217 Cpe04g00591 Cpe15g00593 Bhi05g01716 Tan02g0684 Cmetu01g2682 . Hepe02g0426 . . Cla02g00428 Cam02g0437 Cec02g0435 Cco02g0453 Clacu02g0438 Cmu02g0433 Cre02g0767 Cone12ag1231 Cone8ag1283 . . Lsi10g00496 Csa07g00098 Chy11g00253 Cme01g01263 . Blo13g00504 Bda15g01034 . Bpe15g00814 . . Bma08g00751 Sed01g0194 Cmo02g00256 Cmo20g00745 Cma11g01382 Cma19g00738 . . Cpe16g00318 Cpe05g01371 Bhi10g01847 Tan05g1133 Cmetu11g0608 . . . . Cla02g01088 Cam02g1164 Cec02g1164 Cco02g1213 Clacu02g1156 Cmu02g1118 Cre02g1421 Lsi11g01199 Csa02g01394 Chy01g00682 Cme11g00379
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011207 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 30