Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1424 AATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAATTTAGGAACTTCTTCATTGCACAAAAAGGAGTCCAATCTAAACAATTCTTGGATGCCTAAATTAGAAAAGTTACAAACTAGACGGCCTGGTTCTTTATCTGTGGCCGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCAAAACTTGCTCGAAGAGTTCCAGCCAAGGGATCTAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCAAATAGAGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGATGCCGCACTTGCTTATGATGAAGCTGCGAGGGCCATGTACGGCACTTTAGCTCGCCTGAATTTTCCTAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCACCAACTAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCCTTTCTAGGGTCAACTTCACTGAGTCTGAGTTCCGAATCCACAATAACATCAGATCACTCAGAGGATTGTGCAGTTGAAGATGTCTAG 624 43.43 NRNVRPLFDVANLGTSSLHKKESNLNNSWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESPTKDSPEIKRSSISFLGSTSLSLSSESTITSDHSEDCAVEDV 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24861865 24864408 + CrPI670011_02g014240.1 Cre02g1424 490705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1424 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 35 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cre02g1424 207 SUPERFAMILY DNA-binding domain 95 152 IPR016177 GO:0003677(InterPro)
Cre02g1424 207 SMART rav1_2 95 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1424 207 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1424 207 MobiDBLite consensus disorder prediction 186 207 - -
Cre02g1424 207 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1424 207 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1424 207 Pfam AP2 domain 95 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1424 207 CDD AP2 94 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1424 207 FunFam Ethylene-responsive transcription factor 2 94 153 - -
Cre02g1424 207 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1424 Cre-Chr2:24861865 Cre04g0769 Cre-Chr4:26258651 7.40E-40 dispersed
Cre02g1424 Cre-Chr2:24861865 Cre11g1080 Cre-Chr11:8259520 2.30E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53154 PF00847 AP2 5.90E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1424 - - - 0.0