Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1460 ATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAGGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAATGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGACAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTACTTTGATAGAAGAATCACACGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGGCATTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCATTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAACCCCTTGTTCCACCTTCGTCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCTCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATCGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACCCATAA 1002 43.11 MDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSRFDGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEHATLIEESHELAQEKSDLREEKALLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIATPCSTFVPYIPPNSLTEQQSSQNAPPFIQSGNRSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNGRKSTDICGNP 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26416165 26418640 - CrPI670011_02g014600.1 Cre02g1460 490741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1460 333 MobiDBLite consensus disorder prediction 300 333 - -
Cre02g1460 333 Coils Coil 90 152 - -
Cre02g1460 333 Gene3D - 45 113 IPR036638 GO:0046983(InterPro)
Cre02g1460 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983(InterPro)
Cre02g1460 333 MobiDBLite consensus disorder prediction 218 257 - -
Cre02g1460 333 SMART finulus 56 106 IPR011598 GO:0046983(InterPro)
Cre02g1460 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 114 IPR036638 GO:0046983(InterPro)
Cre02g1460 333 MobiDBLite consensus disorder prediction 271 333 - -
Cre02g1460 333 PANTHER TRANSCRIPTION FACTOR BHLH121 33 327 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cre02g1460 333 MobiDBLite consensus disorder prediction 218 249 - -
Cre02g1460 333 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
Cre02g1460 333 CDD bHLH_AtILR3_like 55 129 - -
Cre02g1460 333 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1460 Cre-Chr2:26416165 Cre05g1645 Cre-Chr5:27158309 3.10E-11 dispersed
Cre02g1460 Cre-Chr2:26416165 Cre04g1646 Cre-Chr4:34844307 3.60E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53156 PF00010 HLH 1.30E-07 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1460 - - - 0.0