Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1483 ATGGCTTCCTCTTTTTTCACTTCCTTCACCCACTCCTCTCTCCGGCCAACCGCCGCCTGCCCCTCCGTTCAGAGGCCGAATCCGGCGGTGGTAGCCTCAGCGGCCGGGCTGCGATTCGGGCGCGAGTTATCGGTTGGGCGTTCCTCGTTTTACGAGGTGCTTGGGATTCCGATGACAGCTTCTTGCCGGGAAATCAAGGCGGCTTACCGGAAACTAGCGAGAACTTGTCATCCAGACGTGGTGGCGGAGAATTCGGCGGAGGAGTTTATTAAGATTCAGGCGGCGTATTTGACATTGTCGGATCCGGATAAAAGGGCGGATTACGACAGGGAGATTTACAAAGCTCAATTGGTTTCGGTTTCGGGTTTGTCGTCTCGGACGGGGGTTTCGAGTTATTCCGGTTACTGTACACGGCGGAATTGGGAATCCGATCAATGTTGGTAA 444 54.73 MASSFFTSFTHSSLRPTAACPSVQRPNPAVVASAAGLRFGRELSVGRSSFYEVLGIPMTASCREIKAAYRKLARTCHPDVVAENSAEEFIKIQAAYLTLSDPDKRADYDREIYKAQLVSVSGLSSRTGVSSYSGYCTRRNWESDQCW 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26856287 26856730 + CrPI670011_02g014830.1 Cre02g1483 490764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1483 147 Gene3D DnaJ domain 36 126 IPR036869 -
Cre02g1483 147 Pfam DnaJ domain 50 109 IPR001623 -
Cre02g1483 147 SUPERFAMILY Chaperone J-domain 47 115 IPR036869 -
Cre02g1483 147 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 12 114 IPR052276 -
Cre02g1483 147 ProSiteProfiles dnaJ domain profile. 49 112 IPR001623 -
Cre02g1483 147 SMART dnaj_3 48 104 IPR001623 -
Cre02g1483 147 CDD DnaJ 50 101 IPR001623 -
Cre02g1483 147 PRINTS DnaJ domain signature 51 69 IPR001623 -
Cre02g1483 147 PRINTS DnaJ domain signature 84 104 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1483 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1483 Cre-Chr2:26856287 Cre07g1579 Cre-Chr7:31259393 3.50E-12 dispersed
Cre05g0405 Cre-Chr5:3673595 Cre02g1483 Cre-Chr2:26856287 1.60E-14 transposed
Cre02g1483 Cre-Chr2:26856287 Cre04g1649 Cre-Chr4:34871020 3.30E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66