Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1488 ATGGCTTCCTCTGCCCCTCATTTCATCTCCCTCATTTTCGTATTTCTCCACTTACTCCCCACTTCCAGAGCCGCCACATTCACCTTCGTCAACAGATGCGATTTCACCGTCTGGCCCGGCATTCTCGCCAATGCCGGCAACCCCACTCTCGGCACCACCGGTTTCGAACTCCCCAAGGATACTTCCCGTTCTTTCCTTGCCCCCACTGGCTGGTCCGGCCGTTTCTGGGGCAGAACCTCCTGTAACTTCGACGGATCCGCTTCTGGATCCTGCCTCACTGGCGACTGCGGCTCTGGTCAAGTCGAATGCAATGGCGCCGGAGCTGCCCCGCCGGCCACTCTGGCTGAGTTCACTCTCGGAACCGGCGGGATGGACTTTTACGACGTCAGTCTCGTTGATGGGTATAACCTACCCATGATCGTTGAAGGAACTGGTGGGTCGGGTCAGTGCGCTTCCACGGGTTGCTCAACGGATCTGAACCGTCAATGTCCGCCGGAGCTGAGGGTCGGCGACGGAGACGCGTGCAAGAGCGCGTGTGAAGCGTTTGGGACTGCTGAGTACTGTTGCAGCGGCGCGTACGGTTCACCCAACTCTTGTAAACCGTCGGTGTACTCAGAAATGTTCAAATCTGCTTGTCCCAAATCGTACAGCTACGCTTACGACGATGCTACGAGTACATTCACTTGTTCCGGCGCCGATTACACCATTACATTTTGCCCTTCTTCTCCAAGCCAAAAATCATCAAGTTTTCCTACTCCAACAACACCAGATACATCTCAAAGCTATGGATCCGAATCCGGGATAGGGTCGGAGTCGGGATCGGAGTATGGGATGGGGTATTCAGGAGCCTCTGGAACTGATATGTTAGGGAGAGGTGCGAGTTTGGGATCGGAGTCGGGATCGGGGTCTGGATCTGGGTCCGGATCTGGGGAAGCTATGCTAGCAGATGGGTCATGGTTGGCTGGTTTGGCCATGGGAGATTCAGCCAAAACAGTCTCTCCTCCATCCATTATACTTTTTATAGTAACATTTATAGTCATTTTGATTTCTCCTTTCTTGTAG 1062 53.86 MASSAPHFISLIFVFLHLLPTSRAATFTFVNRCDFTVWPGILANAGNPTLGTTGFELPKDTSRSFLAPTGWSGRFWGRTSCNFDGSASGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGMDFYDVSLVDGYNLPMIVEGTGGSGQCASTGCSTDLNRQCPPELRVGDGDACKSACEAFGTAEYCCSGAYGSPNSCKPSVYSEMFKSACPKSYSYAYDDATSTFTCSGADYTITFCPSSPSQKSSSFPTPTTPDTSQSYGSESGIGSESGSEYGMGYSGASGTDMLGRGASLGSESGSGSGSGSGSGEAMLADGSWLAGLAMGDSAKTVSPPSIILFIVTFIVILISPFL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26997836 26999297 + CrPI670011_02g014880.1 Cre02g1488 490769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1488 353 PANTHER OS03G0233200 PROTEIN 12 240 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cre02g1488 353 Gene3D Thaumatin 25 240 IPR037176 -
Cre02g1488 353 MobiDBLite consensus disorder prediction 243 271 - -
Cre02g1488 353 SMART tha2 27 240 IPR001938 -
Cre02g1488 353 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cre02g1488 353 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cre02g1488 353 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cre02g1488 353 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Cre02g1488 353 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Cre02g1488 353 MobiDBLite consensus disorder prediction 243 273 - -
Cre02g1488 353 CDD TLP-PA 26 239 - -
Cre02g1488 353 MobiDBLite consensus disorder prediction 291 310 - -
Cre02g1488 353 FunFam THAUMATIN-LIKE PROTEIN 1 25 240 - -
Cre02g1488 353 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Cre02g1488 353 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Cre02g1488 353 Pfam Thaumatin family 31 240 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1488 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1488 Cre-Chr2:26997836 Cre10g0333 Cre-Chr10:2142147 3.50E-106 dispersed
Cre02g1487 Cre-Chr2:26973519 Cre02g1488 Cre-Chr2:26997836 7.30E-78 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g139 . Blo15g00372 . . . . . . . . . Cma20g00763 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00480 . Chy11g00274 . . . . . . . . . Sed05g3597 . Cmo20g00760 . . . . Cpe16g00307 . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . Cla02g01153 Cam02g1229 Cec02g1238 Cco02g1278 Clacu02g1210 Cmu02g1179 Cre02g1488 . Csa02g01374 . Cme11g00395
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116