Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1507 ATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGACGACACAGCGGAGTCTGTGGATGAAAAGAACAAGAAGCGGCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCTTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGGGAGATTGGAACGTTTCCATATCGGAAACCAGCCAATTCAGATCTGCCCAATCAAAATGTGCCGGGTAGTTACATGGTAAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCACCCAGGGGACGATGGAAAAAGTGGAGAGAGCGTTTCGTTGAATGGGCAAAGCTTTAGTGCGTGTGATTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACAGGAGTAAAGGAACTTCCTGACTGTGGACAAGGAAACACAATTTCTAACGTTAATTGCTCAGAATTAAATCCGAAGAAAGGAGGAGGGGTCTGTTTTCTCTTCCGCAACCCATTCACCCGCTTTCTAGGTTGTTTGGGATGGTCATTTATGTTGAATGAGAAGAACTAG 789 44.36 MDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDEKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYRKPANSDLPNQNVPGSYMVNPCNVQCNDQAYCLHPGDDGKSGESVSLNGQSFSACDFENLQCLANQNTGVKELPDCGQGNTISNVNCSELNPKKGGGVCFLFRNPFTRFLGCLGWSFMLNEKN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27262587 27264706 + CrPI670011_02g015070.1 Cre02g1507 490788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1507 262 Gene3D - 48 126 - -
Cre02g1507 262 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 159 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Cre02g1507 262 CDD bZIP 64 117 - -
Cre02g1507 262 FunFam Basic leucine zipper 24 48 126 - -
Cre02g1507 262 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 60 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1507 262 Pfam Basic region leucine zipper 60 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1507 262 MobiDBLite consensus disorder prediction 45 69 - -
Cre02g1507 262 MobiDBLite consensus disorder prediction 50 69 - -
Cre02g1507 262 Coils Coil 71 105 - -
Cre02g1507 262 SMART brlzneu 58 125 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1507 262 SUPERFAMILY Leucine zipper domain 62 107 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0767 Cre-Chr2:4524998 Cre02g1507 Cre-Chr2:27262587 2.30E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53158 PF07716 bZIP_2 2.50E-14 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1507 K25785 - csv:101219501 458.373