Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1521 ATGCTAGTGGTCGCTTTAGCGATGGGATCATCTAACTTCAAATATTTATTAACACAAATACCTATTTGCAAGAACCCTCCGTTCAAAATCAGAGACCTTCTTTTTCTTCATCGCATCGCCTTCTTTCCTTCCAATCGACGACGATTCTCAGATTGCCTTTCTCTTGGCAGTTCTTCTTTGTCTTCCTTGGAACTTCAGATGGAGCAACAGGATTCTGTGGATAAGGAGTCTCTAATTGGTACTTGCAATAGAGATGGTGTTTCTTCAAGTGAAAATATCCACATTACAACTATAAATAATGATGAAACTAGAAGAAAAAATGAGAATACAAGCGACAAACCTAATATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGTGATATTACTGATGATGAAGATGAAGATGATGACGGTGAGGATGGTGGGGATGATGATGGTTGTGATGATAATGATGGTGATGGAGAGAACGAAGGTCAAAACAAGGAAAATTATGGTGATGACAGTAATGCTAAAAATACCAACGGAGATAATTATAAGAGCCAACCTCTTCCTGATGACGAAGTTCGAGTCCTTTGGATGGATGAAAGTGAGACAACTCAGAATGTTAATGATTTAACAGTCATTGATAGGGGATTTGTACACGGTGATTTTGTTGCTTCTGTTTCTGATCCAACTGGGCAAGCAGGTGTTGTGGTAGATGTTAATATCTCTGTTGATTTGTTGGCTCCTGATGGATCAATTATGAAAGATATATCATCTAAAAACTTGAAACGTGTGAGAGATTTCACTGTGGGAGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAGGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTTCCTTACTATCCTGGTCAGCGTGTAAGGGCAAGTTCAACTGTTTTCAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGCACTGTCACTAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCGTCTACCACCCCAGCCGAAGAACAGACTCCAAAGAACTTAAGATTATTAACTTGTTTCTCACATGCAAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCTTCATCATTCTCCGCTGGCCGGACTAAGGACCCATCGCAAACAGAACTTTCTGATTCAGTAAACAACACATTAGATTCTGCACAGCCGGTGGGTGCGTGTGATTCAGAGGATACTGTGCTAGATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCGTCAGTGCATGCGATGGAAATTATAGGAATCCTGTGTATAATAGTTTGCCTGAATCTAGTAGTTCTAGAGCTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACATCGCAAAAAGATTCGTAAAGTTGTCGTCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAAAGTTGATGTTGCATGGCAGGATGGTGGGACAGAACTTGGACTGGATTCAACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTGCCGGAACAGTACGTGGTTGAGAAGGCCTCCGATAATGATGATGATGTTAGTGAAAGCAGACGAGTTGGAGTTGTGAAAAGTGTTCATGCAAAGGAGCGAACAGCTTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATAGAAGAAATTGTTAGTGTGTATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTACGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTAATTCTGCAGAGGCACTGTCTTTGGGAATCAATACAGAGGAATTAAAGCAGCAGAGTTCAACGGACGAGATGATGAGTTGTTCAGAAAAGGCTTCAGGAGGCCAGAAAATAGAAGATCCATCATGTAGTGATGATTGCATTGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGTCTTAAGGATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCCGCTGGTAGTGAAGTAAGTAATGGTGGTGCAAGTTGGGAAACAGTTGATGATGATGAAATGGATTCTGTTGAGAATGCCAAGGAGGATATTGAACTGCAAGATACTGGTGCAAATTCTGAAGAGGAAGAAAGTGAACAGAATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCACTTGCTGCACTTCGATTTGTTACTAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGATTCAATGGATTTGGATTCCCACATTGACAGTGAGACTCAATCCTTGGAAATTCAAGCTTCAGAGGAAAAAGATTCTGGGCTTCATTCTAGCTCTCTTAAATCCAACTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAGAGAAGAGGATAATGTTGCTTCAGAGCCATTAGAAGTGTTAGAATCGGCAAAAGCTTCAAGCAACCTGAGGACTGCAGAATCAGATGCTTCAGCATGCCACGAAGATGGCACCTGCAGCTTCAAAGGCTTTGATATAGCTAAAGATCCTTTGGACCATTATTTTCTTGGTACAAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAATAATTTGCCAGATGGGATATACGTTCGAGTCTATGAAGACCGTATGGACCTTTTGAGAGCAGTCATTGTTGGGGCCTACGGGACCCCTTACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCTGACGTTCCGCCATCAGCATATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGCAAAGTCTGCCTTAGCCTTTTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCGAAATCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTGTTGAATTCTAAACCGTATTTTAATGAAGCTGGATATGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTGAAGGCCTGTGATGCGTACATGAAAGGTCACTTAATTGGTTCTCTCACAGAAGATGCTTCTATAAGAGAAGAAAGCGATCCCAACTCGACTTCTGTCGGATTTAAGCTTATGCTCACTAAGATTATTCCAAAGCTCTTCTCATCATTGAACGAAGTGGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAGTTGTAG 3630 41.29 MLVVALAMGSSNFKYLLTQIPICKNPPFKIRDLLFLHRIAFFPSNRRRFSDCLSLGSSSLSSLELQMEQQDSVDKESLIGTCNRDGVSSSENIHITTINNDETRRKNENTSDKPNIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDDGEDGGDDDGCDDNDGDGENEGQNKENYGDDSNAKNTNGDNYKSQPLPDDEVRVLWMDESETTQNVNDLTVIDRGFVHGDFVASVSDPTGQAGVVVDVNISVDLLAPDGSIMKDISSKNLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNILEDANFPYYPGQRVRASSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPSSFSAGRTKDPSQTELSDSVNNTLDSAQPVGACDSEDTVLDELSGTTESTDLDSVSACDGNYRNPVYNSLPESSSSRALKETTHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTKVDVAWQDGGTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVSESRRVGVVKSVHAKERTACVRWLKPVSRAEDPREFDIEEIVSVYELEGHPDYDYCYGDVVVRLSPVSNSAEALSLGINTEELKQQSSTDEMMSCSEKASGGQKIEDPSCSDDCIDFSDLSWVGNITGLKDGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGGASWETVDDDEMDSVENAKEDIELQDTGANSEEEESEQNNSGRNLALSVPLAALRFVTRLAAGIFSRGPRNPDSMDLDSHIDSETQSLEIQASEEKDSGLHSSSLKSNSFDASDMNSDCGREEDNVASEPLEVLESAKASSNLRTAESDASACHEDGTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMKGHLIGSLTEDASIREESDPNSTSVGFKLMLTKIIPKLFSSLNEVGADCQDFKHFQQL 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27454097 27464453 - CrPI670011_02g015210.1 Cre02g1521 490802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1521 1209 MobiDBLite consensus disorder prediction 138 205 - -
Cre02g1521 1209 MobiDBLite consensus disorder prediction 186 201 - -
Cre02g1521 1209 Pfam Ubiquitin-conjugating enzyme 963 1094 IPR000608 -
Cre02g1521 1209 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 106 1205 - GO:0061631(PANTHER)
Cre02g1521 1209 Gene3D Ubiquitin Conjugating Enzyme 925 1191 IPR016135 -
Cre02g1521 1209 SUPERFAMILY UBC-like 942 1125 IPR016135 -
Cre02g1521 1209 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 958 1118 IPR000608 -
Cre02g1521 1209 MobiDBLite consensus disorder prediction 98 112 - -
Cre02g1521 1209 MobiDBLite consensus disorder prediction 435 456 - -
Cre02g1521 1209 MobiDBLite consensus disorder prediction 144 174 - -
Cre02g1521 1209 SMART ubc_7 961 1118 - -
Cre02g1521 1209 MobiDBLite consensus disorder prediction 860 897 - -
Cre02g1521 1209 FunFam Probable ubiquitin-conjugating enzyme E2 23 922 1197 - -
Cre02g1521 1209 MobiDBLite consensus disorder prediction 794 814 - -
Cre02g1521 1209 MobiDBLite consensus disorder prediction 90 120 - -
Cre02g1521 1209 CDD UBCc 961 1111 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1521 K10581 - - csv:101220698 2041.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1521 Cre-Chr2:27454097 Cre11g2207 Cre-Chr11:33796612 1.50E-84 dispersed
Cre02g1521 Cre-Chr2:27454097 Cre04g1915 Cre-Chr4:36721757 3.10E-178 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41