Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1532 ATGGGAGGAAGTAGAAAATTGAGCTTCGTTGTGGTTTTTGTTATTGTTTTGGCATCGTTGTTTGCGGTTGTTCCGACAGCCGAAGCACAGCTCCGACGAGATTTCTACGCAGATGTCTGCCCTAATGTGGAGTCCATAGTCCGACAGGCTGTAACCAACAAGTTCAAACAAACATTTGTCACTGTTCCCGCTACCCTCCGCCTCTTCTTCCATGATTGCTTTGTTCAGGGTTGTGATGCGTCAGTGATGATTGCTTCAACTGGAGGTAACACCGCAGAGAAGGATCATCCTGACAATCTTTCATTGGCCGGAGATGGATTTGACACTGTCATCAAAGCCAAAGCCGCGGTTGACGCTGTGCCGGGTTGTAAGAATAAAGTCTCTTGCGCCGATATTCTTGTCATGGCTACTCGAGATGTCATTTCATTGGCTAGAGGACCTTCTTATGCAGTGGAGCTAGGAAGAAAAGATGGGCTTGTTTCAAGGGCTTCAGATGTTGAAGGAAAATTGCCTCAACCAACCTTTAATCTCAATCAGCTCAATGCTATGTTTGCTGCCAATGGTCTTTCTCAAACTGATATGATTGCTCTCTCTGCTGCGCACACCGTAGGATTCTCTCACTGCAGCAAATTCGCAAATCGGATATACAATTTCAGCCGTACAAATGGAGTTGATCCAACGCTGAACGCCACATACGCAACCATGCTTCAAGGCATGTGCCCCAAAAACGTGGATCCAAGGATAGCCATAAACATGGATCCAAACACCCCCACTAGGTTCGACAATATGTACTTCAAGAATCTCCAACAAGGAATGGGCCTTTTCACTTCCGACCAAATTCTTTTCACTGATTCAAGGTCCAAGCCCACTGTCAAGATTTGGGCCCATAGTGGACAAACCTTCTACACGGCCTTCGTTGATGCCATGACCAAGTTGGGTCGGGTCGGAGTCAAGACCGGATCCAATGGCAACATCCGTACTGATTGTGGTGCTTTCAACTCTTGA 1005 46.87 MGGSRKLSFVVVFVIVLASLFAVVPTAEAQLRRDFYADVCPNVESIVRQAVTNKFKQTFVTVPATLRLFFHDCFVQGCDASVMIASTGGNTAEKDHPDNLSLAGDGFDTVIKAKAAVDAVPGCKNKVSCADILVMATRDVISLARGPSYAVELGRKDGLVSRASDVEGKLPQPTFNLNQLNAMFAANGLSQTDMIALSAAHTVGFSHCSKFANRIYNFSRTNGVDPTLNATYATMLQGMCPKNVDPRIAINMDPNTPTRFDNMYFKNLQQGMGLFTSDQILFTDSRSKPTVKIWAHSGQTFYTAFVDAMTKLGRVGVKTGSNGNIRTDCGAFNS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27657129 27659482 + CrPI670011_02g015320.1 Cre02g1532 490813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1532 334 Pfam Peroxidase 47 296 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 Gene3D Peroxidase, domain 2 171 312 - -
Cre02g1532 334 FunFam Peroxidase 171 312 - -
Cre02g1532 334 Gene3D - 34 333 - -
Cre02g1532 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Cre02g1532 334 FunFam Peroxidase 34 182 - -
Cre02g1532 334 PRINTS Plant peroxidase signature 267 284 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Plant peroxidase signature 145 160 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 ProSiteProfiles Plant heme peroxidase family profile. 30 333 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PANTHER - 13 333 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Cre02g1532 334 SUPERFAMILY Heme-dependent peroxidases 30 333 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 CDD secretory_peroxidase 30 332 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre02g1532 334 PRINTS Haem peroxidase superfamily signature 253 268 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Haem peroxidase superfamily signature 145 157 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g1532 334 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0584 Cre-Chr1:5127620 Cre02g1532 Cre-Chr2:27657129 4.30E-79 dispersed
Cre02g1532 Cre-Chr2:27657129 Cre05g1921 Cre-Chr5:31381953 3.50E-116 dispersed
Cre02g1532 Cre-Chr2:27657129 Cre04g1364 Cre-Chr4:32468319 7.50E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1532 K00430 - csv:101208254 596.66