Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g1539 | ATGAAAGAGAAAAATGAAGAGAGAAAATTAAAGCAATTCAAAGGGATAAGGATGAGAAAATGGGGAAAATGGGTTGCCGAAATCCGAGAGCCTAATAAACGCTCTCGAATTTGGCTCGGTTCTTATTCCTCTCCCGTCGCCGCCGCCCGTGCCTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCCCGCCTTAATTTTCCTGACTTTTTCACCACCGTTGACCGCTCCTTCCCTCTCTCCGCCGCTGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCATGTCGACGCCCTCGAGTCCTCTCTCCGACATCACTTCGTCCATTCCTCCGACCAAAGTCCCAACCCCACGAAGCTTCGTTCTTCTTCAAGTGGGTTTTCCGATCGGGTCGACTTGAATAAATTTCCTGACCCGGAAGACGCCGATGGCGACTGCGCTAGCACTCATTGGACAAGCTGA | 465 | 55.05 | MKEKNEERKLKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFFTTVDRSFPLSAAAVRKIAAEVGAHVDALESSLRHHFVHSSDQSPNPTKLRSSSSGFSDRVDLNKFPDPEDADGDCASTHWTS | 154 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 27713430 | 27713894 | + | CrPI670011_02g015390.1 | Cre02g1539 | 490820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g1539 | 154 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 5 | 145 | - | - | |
Cre02g1539 | 154 | MobiDBLite | consensus disorder prediction | 108 | 154 | - | - | |
Cre02g1539 | 154 | MobiDBLite | consensus disorder prediction | 109 | 131 | - | - | |
Cre02g1539 | 154 | CDD | AP2 | 11 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g1539 | 154 | PRINTS | Ethylene responsive element binding protein signature | 13 | 24 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g1539 | 154 | PRINTS | Ethylene responsive element binding protein signature | 51 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g1539 | 154 | ProSiteProfiles | AP2/ERF domain profile. | 12 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g1539 | 154 | SMART | rav1_2 | 12 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g1539 | 154 | FunFam | Ethylene-responsive transcription factor 2 | 11 | 70 | - | - | |
Cre02g1539 | 154 | Pfam | AP2 domain | 12 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g1539 | 154 | Gene3D | AP2/ERF domain | 11 | 70 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g1539 | 154 | SUPERFAMILY | DNA-binding domain | 12 | 70 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1539 | Cre-Chr2:27713430 | Cre05g2198 | Cre-Chr5:33703466 | 1.40E-40 | dispersed | |
Cre02g1539 | Cre-Chr2:27713430 | Cre04g1321 | Cre-Chr4:32028340 | 2.60E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53159 | PF00847 | AP2 | 2.90E-11 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g1539 | K09286 | - | csv:101209150 | 247.284 |