Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1539 ATGAAAGAGAAAAATGAAGAGAGAAAATTAAAGCAATTCAAAGGGATAAGGATGAGAAAATGGGGAAAATGGGTTGCCGAAATCCGAGAGCCTAATAAACGCTCTCGAATTTGGCTCGGTTCTTATTCCTCTCCCGTCGCCGCCGCCCGTGCCTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCCCGCCTTAATTTTCCTGACTTTTTCACCACCGTTGACCGCTCCTTCCCTCTCTCCGCCGCTGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCATGTCGACGCCCTCGAGTCCTCTCTCCGACATCACTTCGTCCATTCCTCCGACCAAAGTCCCAACCCCACGAAGCTTCGTTCTTCTTCAAGTGGGTTTTCCGATCGGGTCGACTTGAATAAATTTCCTGACCCGGAAGACGCCGATGGCGACTGCGCTAGCACTCATTGGACAAGCTGA 465 55.05 MKEKNEERKLKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFFTTVDRSFPLSAAAVRKIAAEVGAHVDALESSLRHHFVHSSDQSPNPTKLRSSSSGFSDRVDLNKFPDPEDADGDCASTHWTS 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27713430 27713894 + CrPI670011_02g015390.1 Cre02g1539 490820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1539 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 5 145 - -
Cre02g1539 154 MobiDBLite consensus disorder prediction 108 154 - -
Cre02g1539 154 MobiDBLite consensus disorder prediction 109 131 - -
Cre02g1539 154 CDD AP2 11 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1539 154 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1539 154 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1539 154 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1539 154 SMART rav1_2 12 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1539 154 FunFam Ethylene-responsive transcription factor 2 11 70 - -
Cre02g1539 154 Pfam AP2 domain 12 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1539 154 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1539 154 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1539 Cre-Chr2:27713430 Cre05g2198 Cre-Chr5:33703466 1.40E-40 dispersed
Cre02g1539 Cre-Chr2:27713430 Cre04g1321 Cre-Chr4:32028340 2.60E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53159 PF00847 AP2 2.90E-11 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1539 K09286 - csv:101209150 247.284