Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1541 ATGAGGAAGAGGGCCGTTTCAATCTCAAGCCGAATGCTTACGCTTCATATTCTTGACGGATTTGGCACAAGAAATCAAACACAAGGAAACGGGGAAAAGGAAAATCAAGCCTCTGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCTTTGCCTTTTCTACCATATTCACCAACACCCACCAAGATCTTTGCTCTGTTTTGTTCCCTTCTCTTCTTGGCGATCGAGCATTGAGAAAGAAGAGGGGAGGGAAAATGTGGGATCTCAATGATTCTCCCGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGATGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTCGGGGCATCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAATTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCAATGGCGGTTCTGCAGTCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGAAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTGACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACCCTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTAGTGAAACGATCCTTCGATCTCCACCGTCCGTCGAAATGACGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGATTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTACAGAGACCCTCTTGA 1713 46.53 MRKRAVSISSRMLTLHILDGFGTRNQTQGNGEKENQASALLLLLLLLPLFAFSTIFTNTHQDLCSVLFPSLLGDRALRKKRGGKMWDLNDSPDHGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQSIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHEAARAYDRAAIKFRGSEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKKHTLSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRSETILRSPPSVEMTKHGRLETPMELQILHNYSPQINQSNSQIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFLQRPS 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27750047 27753715 + CrPI670011_02g015410.1 Cre02g1541 490822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1541 570 CDD AP2 226 281 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 Gene3D AP2/ERF domain 317 376 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 Gene3D AP2/ERF domain 225 284 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 ProSiteProfiles AP2/ERF domain profile. 318 375 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 FunFam AP2-like ethylene-responsive transcription factor 317 377 - -
Cre02g1541 570 CDD AP2 317 377 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 SUPERFAMILY DNA-binding domain 317 377 IPR016177 GO:0003677(InterPro)
Cre02g1541 570 FunFam AP2-like ethylene-responsive transcription factor 225 284 - -
Cre02g1541 570 SUPERFAMILY DNA-binding domain 225 283 IPR016177 GO:0003677(InterPro)
Cre02g1541 570 SMART rav1_2 226 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 SMART rav1_2 318 381 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 PRINTS Ethylene responsive element binding protein signature 319 330 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 PRINTS Ethylene responsive element binding protein signature 357 377 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 432 - -
Cre02g1541 570 ProSiteProfiles AP2/ERF domain profile. 226 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 Pfam AP2 domain 226 274 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1541 570 Pfam AP2 domain 317 367 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1541 Cre-Chr2:27750047 Cre02g2381 Cre-Chr2:37234669 1.30E-89 dispersed
Cre02g1541 Cre-Chr2:27750047 Cre04g1320 Cre-Chr4:32003930 1.10E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53160 PF00847 AP2 2.50E-09 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1541 K09284 - csv:101208665 780.015