Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1545 ATGGAAGCTAATTTTCATGATCTTAAGGTGCCTCTAAATCCACGGGGCCTCAATAATGAAGACAGAGCAGTAGAAATCATAGAAGCCGGAGGATTCCCCGGCGACGAATTTTCAGAACAAGGCATTGCAGCAACATGTCGTCTAAGAGTCCCAAGAATAGGCTGCCCAGCCAAAGTCCGTTCTCTTCAAAAAGCCCTAGCCATGGTCCACGGCGTAAAACGAGCAACCGTAGTTCTCGAAATCGAAGAAGCCAAAGTCCTCTTCGATCCAAATTTAACCACAGAGACCCTAATCCTCACAGAAATCGACAATTCCGGCTTCGAAGCCGAGCTCATCTCCGCTGCAGACGAAGCCTACAAAGTTCACATAAAACTTAATCGATCGAGCCCCGGAGACATGCCCGCCATCAAATCCTCTCTCGAGCAAGCTCCGGGAGTGAACTGTGTGGAAATGGAGGCGATAGGGCGGATGGTAGCCATCGGCTACGACCCTGATCGGACGGGTCCAAGGTGCCTTCTGCAGTTCCTGGAGAAGTATGGAGCAAGCTTGTATGTGCCTCCGAAGAGAAGAGATGTGGAGCAGCTTCAAGAAGCTTGTGCTTATCGGAATTTGTTCTTGCTGAGCTGCTTGTTTTCTGTTCCAGTGGTGGCTTTTGCAATGGTGCTTCCAATGCTTCCTCCTTATGGAGATTGGTTGAATTTTAGGGTTTGCAGTATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACTCCAGTCCAGTTCCTTGCTGGTCGCAGATTTTATGTAGGATCATACCGCGCATTACAACGGAAATCTGCAAATATGGATGTTTTGGTTGCTGTAGGCACCAATGCAGCTTACTTTTACTCAGTATACATAGTTTTTAAAGCATCCACTTCCAACTCTTTTAAGGGGAAAGATTTCTTTGAGACTAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGCAAATCATCAGATGCTTTAGCACAGCTTGCTCATCTTGCTCCTGATACAGCTTGTTTGATGACCTTTGATGATCATGGAAATTTGCTATCAGAGGTGGAGATTGATACCCAACTCATACAGAGGAATGACATAATTAAGATTGTTCCTGGGGCAAAAGTTCCTGTTGATGGGGTTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACAGGAGAAGCAAGATCCATTGGCAAATCAACTGGTGATAAGGTTATTGGAGGGACTGTCAATGAAAATGGATGCTTATTTGTTAAAACCACTCATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTCGTGGAGTCGGCTCAGCTATCACGAGCCCCAGCTCAAAAATTAGCAGATCAGATATCAAAGTTCTTTGTTCCTGTTGTTGTTGTGGCAGCATCTGTGACATGGCTGGGATGGTTAATTTGTGGAGAACTTGGTTTATACCCCAAACATTGGATACCAAAAGGCATGGATGAGTTTGAACTTGCCCTGCAATTTGCCATTTCAGTGCTGGTGATTGCATGCCCATGTGCCCTTGGTTTAGCAACACCGACTGCGATCATGGTTGCGTCGGGAAAAGGTGCTTCTCTAGGTGTGCTCATTAAAGGGGCAAGTGCACTTCAAAATGCATACAAGGTGAAAACAGTAGTTTTTGACAAGACTGGAACTCTAACAGTTGGGAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGTGATGTAGCAATAGCAATTGAGTCAAACAGCGAACACCCTCTAGCAAAATCTGTAGTGGAGCATGCAAAGAAAATGAGAAAGAAGTTTGGGGCCCGAAGTGAATGTCGCAAACGCATCCAGAACTTCGAGGTGTTCCCGGGAGAAGGGGTTGGAGGAAGAATTGATAGAAAGACAGTTTTAGTAGGAAACAGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTTGATCGGTATGTTATAGAAAACGAGCGACTGGCTCAAACATGTGTCTTGGTGGCTATTAATGGCAGGGTAGCAGGAGGTTTTGGTGTTATAGATGCGCCAAAGCCTGGGACTAAAGCTGTCATATCATTTCTTCGTTCGATTGGCATCTCAACCATAATGGTCACCGGAGATAACTGGGCCACAGCCTTCGCGGTTGCAAGAGGGGTCGGGATTAGTGAAGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATTAGATCCTTAAAGACGTCAGGGAATATTGTGGCAATGGTGGGAGATGGAGTAAATGACTCACATGCCTTAGCTGCAGCTGATGTCGGTATTGCAATTGGTGCTGGAACAAATATTGCTATTGAAGCAGCTGATATTGTTCTAATGCGAAGCAATTTAGAAGATGTGGTTACTGCTATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATTTGGGCTCTTGGCTACAATATCATCGGCATGCCTATTGCTGCCGGAATCCTATATCCCTTCTTTGGAATCCGATTGCCACCGTGGCTTGCCGGTGCCTGTATGGCTGCTTCCTCCCTTAGTGTTGGTTTCCAGCCGATAACCCACCTCAGTTTTAGCTTCGTATTTTCTTTGGATTTTGGTTTCCCACTGTATGAATTGGACCCCGATCCGAACCCCCATTGTGGATTTGGGTTTAAGTTTTCATCGGCAGCTTCGCCAAAGTCAATGGCGTCGAAGGCTTCTTTGCCTTCTCCTTCGGCCGACAGATCGGACCTGCACGATGACACCCAGATAATGAAACCACGAGGACAAGATCCTACTCCTAAGGAGATCTTATCACTCATTGAATTTCTAAAGAAGCAAGTTGCTGGCGAACGTTGTAACTCCGTACAGAAAAGAATGGAAGAAAACAAGCAGAAGTTGGTTGGCATCACCACTCACTTGTTGAAATCATCAACAGAAAGAAGGATAAGAAGGACAAGTGATTCAGATAAGAGGGTGGATCTATTGACGAAGAGGCAGAAAGATGCACTTGATATGCAGAATGGTATAGATGTAAGTGATGGGGAAAATGACCGATCTCAAGAAGATGGCCATGCATCTTCTGCAGTTCTTCTTGGATCTAATGTTGCAGTAAGAAATGCTGTACGACCTATTAAGCTTCCTGAAGTTAAAAGATTGCCTCCTTATACTACATGGATATTTTTGGACAGAAACCAGAGAATGACTGAAGATCAATCTGTGGTTGGTCGAAGGAGAATTTATTATGGTCAAAGTGGAGGAGAAGCCCTCATTTGCAGTGACAGTGAGGAAGAAGTAATTGATGACGAAGAGGAAAAGAGAGATTTTGTGGAATCTGAAGATTATATACTTCGCATGACAATGAAAGAAATTGGTTCATCTGATCTGGTGCTAGAGTCCCTTGCCAATTGTTTCTCTAGAAGTCCTGGTGAAATAAAGGCAAGATATGAAGTGCTTACCCAGGGAGAAAAGGCTATAGGGTGTTTTAATAATAGGATCAATGAGGAGATCTCACATATTGGAAGTACTCTTCTTGATAAAGATCTTGATGCAGCTCTTGATTCCTTTGACAATCTATTTTGCCGTCGTTGCCTTGTCTTTGATTGTAGACTACATGGTTGTTCCCAAGATCTTGTCTTTCCTGCTGAGAAACAACCTAAATGGGGTCCTGTAGGTGAGGAAAATGCACCATGTGGTCCACTCTGCTATCGATCAGTGCTGAAATCAGACAAAAATGGTACAGGGGGTTCTCCACTTCGCAGTGACTTGGAAGAAAAACATCCCATGTCATCTGATGGTACTGGAGCTCAAATCTCTACGAAGAAGAAATCTTCTTGTAAAACTGGTCGAAGAAGGGCAAAATCCTATCAAAGTGAAAGTGCCTCATCAAATGCAAAGAACATATCAGAAAGCAGTGAGTCAGAGAATGGACCCAGGCAGGATGGGAATACTATTCATCATTCACCTCCACCAAATTCTAAGATAACAGGAGCTGGTGGAATTCGAAAAAGGAACAGCAAGCGTGTTGCTGAGCGTGTTCTCATTTGCATGCAGAAAAGGCAGAAGAAAATGGCTGCTTCTGAGTCAGAATCTCTAGCCAGTGTAGGTCATTGTCCAAATGATGTGAAATTAAAATCTAACTCATGTAAAGAAAATGACGATACTAGTTCTTCTTCACGTAAGAATATTAGATCTCCTACACCTGGAAGGTCTAGGAGGAGGGAATCCCTGACTCAGAAATGCAACAAATTTGAGCAGAATGAAACACTCAATAATTCCTCAAATGAGATAATTACTCATCTACCAGCCGACAGTTGTGATGACAACTCAAGGAAAGAAGAGTGTGTGGATGAAAATTTATGCAAGCAGGACTTGGCAGATGATAAATCTTGGAAGGCTATTGAAAAAGGGCTCTATGAGAAGGGTATTGAGATTTTTGGTAGGAACAGCTGCTTAATAGCAAGGAATTTACTAAATGGGATGAAGACCTGTTGGGAGATTTTTCAATACATGAATTATTCTGAGAACAAGAATGGCAGCCAAGTGGGTGATGGGTCAAATCCTCATCTTGAAGGTTACACCAAGGGTAATAATGAAGTGAGAAGAAGGTCAAGATTCTTACGTAGAAGGGGTAGAGTTCGTCGACTGAAATATACCTGGAAATCAGCTGCTTACCATTCTATTCGGAAGCGAATAACTGAAAGGAAAGATCAGCCGTGCAGACAGTATAATCCATGTGGTTGCCAAACTGCCTGTGGAAAGCAGTGTGCCTGTCTTTTAAATGGCACCTGCTGTGAGAAGTACTGTGGGTGCCCTAAGAGTTGCAAGAATCGTTTTAGAGGATGCCATTGTGCCAAAAGTCAATGTCGTAGTCGTCAATGTCCTTGTTTTGCGGCAGATAGAGAATGTGATCCAGATGTTTGTAGGAATTGTTGGGTCAGCTGTGGTGATGGTACTCTCGGGGTTCCCAACCAAAGAGGTGACAATTATGAGTGCAGGAACATGAAGCTTCTTCTGAAACAACAACAAAGAGTGTTACTCGGAAGATCTGATATATCTGGTTGGGGAGCATTTCTAAAGAATAGTGTTGGCAAACACGAATATCTTGGCGAGTATACTGGGGAGTTAATTTCACATAGGGAGGCTGATAAACGGGGCAAAATATATGATCGTGAAAACTCATCGTTTCTGTTCAATTTGAATGACCAGTTTGTTCTTGATGCGTACCGAAAGGGCGATAAATTAAAATTTGCTAATCATTCTCCGGATCCGAACTGCTACGCCAAGGTCATCATGGTTGCGGGAGATCACCGGGTTGGCATCTTTGCCAAGGAAAGAATCAGTGCTGGGGAGGAACTCTTTTATGATTATAGATATGAGCCTGATCGAGCCCCGGCTTGGGCAAGGAAGCCTGAGGCATCGGGGTCAAAAAAAGACGACGGTGCTCCATCGAGTGGACGAGCAAAGAAACTCGCTTAA 5535 43.76 MEANFHDLKVPLNPRGLNNEDRAVEIIEAGGFPGDEFSEQGIAATCRLRVPRIGCPAKVRSLQKALAMVHGVKRATVVLEIEEAKVLFDPNLTTETLILTEIDNSGFEAELISAADEAYKVHIKLNRSSPGDMPAIKSSLEQAPGVNCVEMEAIGRMVAIGYDPDRTGPRCLLQFLEKYGASLYVPPKRRDVEQLQEACAYRNLFLLSCLFSVPVVAFAMVLPMLPPYGDWLNFRVCSMLTVGMVLKWIFCTPVQFLAGRRFYVGSYRALQRKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFKGKDFFETSSMLISFILLGKYLEVMAKGKSSDALAQLAHLAPDTACLMTFDDHGNLLSEVEIDTQLIQRNDIIKIVPGAKVPVDGVVISGESNVNESTITGEARSIGKSTGDKVIGGTVNENGCLFVKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAASVTWLGWLICGELGLYPKHWIPKGMDEFELALQFAISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKTVVFDKTGTLTVGRPEVVSVVLFSTFPMQELCDVAIAIESNSEHPLAKSVVEHAKKMRKKFGARSECRKRIQNFEVFPGEGVGGRIDRKTVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCVLVAINGRVAGGFGVIDAPKPGTKAVISFLRSIGISTIMVTGDNWATAFAVARGVGISEVFAEMDPIGKANKIRSLKTSGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFFGIRLPPWLAGACMAASSLSVGFQPITHLSFSFVFSLDFGFPLYELDPDPNPHCGFGFKFSSAASPKSMASKASLPSPSADRSDLHDDTQIMKPRGQDPTPKEILSLIEFLKKQVAGERCNSVQKRMEENKQKLVGITTHLLKSSTERRIRRTSDSDKRVDLLTKRQKDALDMQNGIDVSDGENDRSQEDGHASSAVLLGSNVAVRNAVRPIKLPEVKRLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYGQSGGEALICSDSEEEVIDDEEEKRDFVESEDYILRMTMKEIGSSDLVLESLANCFSRSPGEIKARYEVLTQGEKAIGCFNNRINEEISHIGSTLLDKDLDAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPKWGPVGEENAPCGPLCYRSVLKSDKNGTGGSPLRSDLEEKHPMSSDGTGAQISTKKKSSCKTGRRRAKSYQSESASSNAKNISESSESENGPRQDGNTIHHSPPPNSKITGAGGIRKRNSKRVAERVLICMQKRQKKMAASESESLASVGHCPNDVKLKSNSCKENDDTSSSSRKNIRSPTPGRSRRRESLTQKCNKFEQNETLNNSSNEIITHLPADSCDDNSRKEECVDENLCKQDLADDKSWKAIEKGLYEKGIEIFGRNSCLIARNLLNGMKTCWEIFQYMNYSENKNGSQVGDGSNPHLEGYTKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCACLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGVPNQRGDNYECRNMKLLLKQQQRVLLGRSDISGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKDDGAPSSGRAKKLA 1844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27832144 27863883 + CrPI670011_02g015450.1 Cre02g1545 490826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1545 1844 PRINTS P-type cation-transporting ATPase superfamily signature 771 790 - -
Cre02g1545 1844 PRINTS P-type cation-transporting ATPase superfamily signature 564 578 - -
Cre02g1545 1844 PRINTS P-type cation-transporting ATPase superfamily signature 718 728 - -
Cre02g1545 1844 PRINTS P-type cation-transporting ATPase superfamily signature 696 707 - -
Cre02g1545 1844 PRINTS P-type cation-transporting ATPase superfamily signature 794 806 - -
Cre02g1545 1844 PRINTS P-type cation-transporting ATPase superfamily signature 400 414 - -
Cre02g1545 1844 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872(InterPro)
Cre02g1545 1844 CDD HMA 48 110 IPR006121 GO:0046872(InterPro)
Cre02g1545 1844 Gene3D - 332 454 - -
Cre02g1545 1844 SMART CXC_2 1629 1666 IPR033467 -
Cre02g1545 1844 SFLD p-type atpase 546 823 IPR044492 -
Cre02g1545 1844 MobiDBLite consensus disorder prediction 1264 1358 - -
Cre02g1545 1844 Coils Coil 1112 1132 - -
Cre02g1545 1844 FunFam Copper-transporting ATPase 1, putative 332 454 - -
Cre02g1545 1844 NCBIfam HAD-IC family P-type ATPase 317 848 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre02g1545 1844 SUPERFAMILY HMA, heavy metal-associated domain 45 117 IPR036163 GO:0046872(InterPro)
Cre02g1545 1844 Pfam haloacid dehalogenase-like hydrolase 560 785 - -
Cre02g1545 1844 Gene3D - 531 827 IPR023214 -
Cre02g1545 1844 SUPERFAMILY SET domain 1597 1813 IPR046341 -
Cre02g1545 1844 NCBIfam heavy metal translocating P-type ATPase 277 875 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cre02g1545 1844 Gene3D - 571 649 IPR023299 GO:0000166(InterPro)
Cre02g1545 1844 Gene3D - 650 702 IPR023299 GO:0000166(InterPro)
Cre02g1545 1844 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 17 874 - -
Cre02g1545 1844 Pfam CXC domain 1633 1664 IPR041355 -
Cre02g1545 1844 MobiDBLite consensus disorder prediction 1396 1410 - -
Cre02g1545 1844 MobiDBLite consensus disorder prediction 1818 1837 - -
Cre02g1545 1844 MobiDBLite consensus disorder prediction 1024 1044 - -
Cre02g1545 1844 CDD P-type_ATPase_Cu-like 205 873 - -
Cre02g1545 1844 Pfam E1-E2 ATPase 363 542 - -
Cre02g1545 1844 SUPERFAMILY Calcium ATPase, transmembrane domain M 312 558 IPR023298 -
Cre02g1545 1844 Gene3D SET domain 1595 1812 IPR046341 -
Cre02g1545 1844 ProSiteProfiles SET domain profile. 1695 1810 IPR001214 GO:0005515(InterPro)
Cre02g1545 1844 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 860 1844 IPR025778 GO:0031519(InterPro)
Cre02g1545 1844 CDD SET_EZH 1695 1811 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase 1 signature 205 226 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase 1 signature 240 260 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase 1 signature 260 285 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase signature 748 765 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase signature 314 333 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase signature 473 487 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase signature 262 281 - -
Cre02g1545 1844 PRINTS Copper-transporting ATPase signature 334 352 - -
Cre02g1545 1844 MobiDBLite consensus disorder prediction 1307 1343 - -
Cre02g1545 1844 MobiDBLite consensus disorder prediction 921 952 - -
Cre02g1545 1844 FunFam Putative histone-lysine N-methyltransferase EZH2 1595 1812 - -
Cre02g1545 1844 SUPERFAMILY Calcium ATPase, transduction domain A 364 450 IPR008250 -
Cre02g1545 1844 ProSitePatterns E1-E2 ATPases phosphorylation site. 566 572 IPR018303 -
Cre02g1545 1844 ProSiteProfiles CXC domain profile. 1581 1680 IPR026489 -
Cre02g1545 1844 SMART set_7 1695 1816 IPR001214 GO:0005515(InterPro)
Cre02g1545 1844 MobiDBLite consensus disorder prediction 1394 1429 - -
Cre02g1545 1844 SFLD Haloacid Dehalogenase 546 823 - -
Cre02g1545 1844 SUPERFAMILY HAD-like 562 873 IPR036412 -
Cre02g1545 1844 Pfam SET domain 1706 1809 IPR001214 GO:0005515(InterPro)
Cre02g1545 1844 Gene3D - 43 117 - -
Cre02g1545 1844 MobiDBLite consensus disorder prediction 1818 1844 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1545 Cre-Chr2:27832144 Cre11g1622 Cre-Chr11:27042233 1.10E-65 dispersed
Cre04g0562 Cre-Chr4:22188134 Cre02g1545 Cre-Chr2:27832144 6.90E-245 transposed
Cre04g2168 Cre-Chr4:38809297 Cre02g1545 Cre-Chr2:27832144 4.70E-188 transposed
Cre05g1076 Cre-Chr5:10035495 Cre02g1545 Cre-Chr2:27832144 1.20E-19 transposed
Cre05g1742 Cre-Chr5:29135965 Cre02g1545 Cre-Chr2:27832144 3.50E-86 transposed
Cre06g0891 Cre-Chr6:2232607 Cre02g1545 Cre-Chr2:27832144 3.10E-20 transposed
Cre08g0822 Cre-Chr8:21320826 Cre02g1545 Cre-Chr2:27832144 1.20E-22 transposed
Cre08g0856 Cre-Chr8:21707346 Cre02g1545 Cre-Chr2:27832144 1.40E-22 transposed
Cre09g2239 Cre-Chr9:41571191 Cre02g1545 Cre-Chr2:27832144 6.00E-241 transposed
Cre10g1092 Cre-Chr10:21557644 Cre02g1545 Cre-Chr2:27832144 1.90E-95 transposed
Cre10g1306 Cre-Chr10:26338421 Cre02g1545 Cre-Chr2:27832144 2.00E-174 transposed
Cre02g1545 Cre-Chr2:27832144 Cre04g1382 Cre-Chr4:32638277 5.60E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53161 PF00702 Hydrolase 4.80E-41 CL0137 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1545 - - - 0.0