Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1550 ATGGAGTGGGTTCGAGGGGACCAACTCGGCCGTGGAAATTTTGCCAAAATCAATTTAGCAAAACTAACAAAGGGGTTTGATCAGTTCCCGCCATTAATGGCCGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCGCTCAAGAACGAGAAGCAAATTCTGGATCGAATTGGGATTTGCCCACAGATTGTTACTTGTTTTGGCGATGGAATCAGTGTTGAAAGTGATGGGGAGAAGTGTTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGTCTTGCGGATGTTGTGAGAATCCATGGCGGTGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAAGGCGATTCTTTGGGGACTCCGGCATGTTCATGGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGCGATGTTAAGATCGCTGATTTTGGGCTTGCTAAAGCGGCTGGAAAAATTACGGCGGCGGAAACAGAGGAGCGATTTGAGTGGAGAGGAACTCCGATGTATATGTCGCCGGAGACTGTGAACGGTGGTGAGTATGAGCCGCCGTGTGATATTTGGGCGTTGGGATGCGCCGTCGTGGAGATGGTGGCGGGAAAGCCGGCGTGGAGGGTTGGGCCGGCAACGGATATATTTGGATTGATGATGAGGATTGGAGTCGGAGACGAAGTACCGGAGATGCCGGAGAATTTATCGGCGGAGGGGAAAGATTTTATCCGGCGGTGTTTGGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAACCACCCATTCGTAGCCGGTGCCGGTGATACTGTTACATTGAAGGAAGCAGAAGTAGCGACGGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCCGAACAGGGTTCTGATGAGTGGAGTTTCTGCTCTTCTAATTCGTCGCCGGAGATTTTGAGTAGGGTCCGGCGGCTGGTGACGGGGAAGCCTTTGGATTGGTCTGTGATGGATAGTTGGGTGACAGTGAGGTGA 1035 50.72 MEWVRGDQLGRGNFAKINLAKLTKGFDQFPPLMAVKSSVSSLSSVSLKNEKQILDRIGICPQIVTCFGDGISVESDGEKCYNLFLEYANGGSLADVVRIHGGGLPEFDVRRYTKAILWGLRHVHGNGFVHCDLKLSNVLVFGNGDVKIADFGLAKAAGKITAAETEERFEWRGTPMYMSPETVNGGEYEPPCDIWALGCAVVEMVAGKPAWRVGPATDIFGLMMRIGVGDEVPEMPENLSAEGKDFIRRCLVKDPRKRWTAEMLLNHPFVAGAGDTVTLKEAEVATESPTGPFDFPEFVCSEQGSDEWSFCSSNSSPEILSRVRRLVTGKPLDWSVMDSWVTVR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27947778 27948812 + CrPI670011_02g015500.1 Cre02g1550 490831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1550 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 271 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre02g1550 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524(InterPro)
Cre02g1550 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g1550 344 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1550 344 SMART serkin_6 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1550 344 Gene3D Transferase(Phosphotransferase) domain 1 2 294 - -
Cre02g1550 344 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Cre02g1550 344 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1550 344 CDD STKc_MAPKKK 2 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1550 Cre-Chr2:27947778 Cre09g0485 Cre-Chr9:4632714 2.00E-53 dispersed
Cre06g1995 Cre-Chr6:27422119 Cre02g1550 Cre-Chr2:27947778 3.20E-29 transposed
Cre02g1550 Cre-Chr2:27947778 Cre04g1313 Cre-Chr4:31942065 1.10E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63871 PF00069 Pkinase 8.30E-51 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1550 - - - 0.0