Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1551 ATGGCGGACGAACAGCCCTCAGCCTCCAATCGGCGGAGGAGCCGAGGATCTGAGGCAGCTGCCCGACTTACGGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCGGAAGCTGGTGGTTTCCAAGTGAAGTTAGAAAACCCTATCTACGATACGATTCCAGAGGATGAGTATGATGCTCTCGTCGCAAAGCGTCGCGAAGAAGCCCGAGGGTTTATTGTCGATGACGACGGTCTTGGATATGGAGACGAAGGTGAGGAAGAAGATTGGTCGAAAGCTGGGGTTTGTTCTTCCGATGAGTCTGATGGTGAGCTAGATAAACCTAAGAAGAGGAAAGTAGAGAAGAAAGAGGCGCAACCTAAGAAACCCTCTTCTTCTTCTCTATCGGCGGCGGCAGCGATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGCTAGAGACGATAAGGCTAAAGGATTGGCGTGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGATAGAGAGAGGCGTAGAAAGGGGCCAATTGGAGCTATACCGATTTCGAGGACTGTTGCGCCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTGCTCAGAGTCTTAATTTGACTGGCGGGTCTGAATTGATTAAGGATAATGAAAATGGGAACTCTGGAATGACCAGGGTTGTTACAGACAGTGATTTAGAGCCTGCGCGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAGACTAAGGAATTTGATCCGAAGGAGGACTTGAATTCTCAAACCAACTTGGATTCGGTTGAGCAATCACCTAATTCTTCGATCAAGGAAGATGTAATTGGGGATGGCATGCCAATTATGGTTGAAACGAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTTTGAATGCCAAGATTACCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTAAGAAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAAACTGCTGAAGAGAAATCCGATTTTGATGTCGACGCCGACGGCTCTCTCCCTTTCTATATCGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCTAGTGCTTCTTTTCTCTATTCGGACGAGATGTTGGAGCTTCAGAAGGACGCTGAACAGTCTAAGCTTTCTCCTGCAGATCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGTTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTGAAGAGGAAGTATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAACTATGCTCTTAAGATTAATTACCCATTCAAGCACCCCCCACTTCCCGCTGATCTAAAAGGAGAATCTTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTCTCTTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCCCCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTTCTATGATTGTCACTGCAATACACATAAAGACCATCATTAATGAAAGACAGAATGTCAACGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAATCTGCAGATAGAAATTTGAAGGCTGGATCAAATGTTCTAATCTGCGAGGGCAATGAAAGGGCATTGTTGAATCGGTTAATGATTGAATTATTCAAATTGGATAGTGATGTGTTGGTTGGGCACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGACGCCTTAAGAGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGGGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACGTATTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTGGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCACATGAAATTCCAAAAATGTATCAAGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTAATGTTTCATTTAAGCGTTCTTCCCCTTACTCGACAATTAACGAATATCAGTGGTAATCTCTGGGGAAGAAGCCTACAGGGTGCTAGGGCCCAAAGAGTAGAGTATCTCTTACTTCATGCATTTCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGTGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATAGTTCTGAGGAGAAAAATGTTGATGAATTTGATTTAGATGATGCAAATGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGGTCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCGAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAAAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCCCTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTGAACCTAGAGGTAATTTATGGCGATACGGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAATACAAGTGCTTAGAAATTGATCTCGACGGTTTGTATAAGAGAATGTTGCTTCTCAAGAAAAAGAAATATGCTGCTGTAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGAAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCGTGTGAGGATGTCATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCTCAAAGGTTAAAACAAATGGGCTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATTATTTGCTGTGAGCAGGGGTCTACTTCTGGTGGTTCTACAAGCATTGCTCAACGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAGCAGATTCACCCTGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTTTGGGGCTTGATTCATCAAAGTTCCAGATCAGATCAAGTGAAGTTTCCCGAAGCGATGTCTCCACTTCCCTCCTGTGTTCTGTAAATGATGAAGAAAGGTATCAGGGATGCATACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTACGTGTCCTGCTATCTTTAGTTCTGTATACAAATCTACAGATGGAAAGCAAGAAAAGTCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGCAAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAACTATTCCACACGTGCCGTCAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCGAACTATCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAAGCAGCTTTCGTATTTCAGTCACATTTTGGATACCGAACGCTGTCTGGAAAAGTTGGAGGTTCATGCAAGGGTGACTTTAGAGAAAGAAATGGCGAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGGGATCGCAGTGCATATGGTTGGATGCAGTTGCAAAATTTTGTGGTGGAGTTTTCGTTCCGTGTTCCACCGTTTGAATTGTTAGCTAATAATGTTCATAGTTACTTTATCAATGAATGGTTTAGGCCACCATGA 4725 43.26 MADEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTARDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGPIGAIPISRTVAPVPAVKSEGLTAQSLNLTGGSELIKDNENGNSGMTRVVTDSDLEPARAGVEVQGNGETKEFDPKEDLNSQTNLDSVEQSPNSSIKEDVIGDGMPIMVETKAEPLVKKEPVSTLNAKITNERDPALSATAGWQAVRSEGSGSVNSAAETAEEKSDFDVDADGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVKNMQRCIYAIPSASFLYSDEMLELQKDAEQSKLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYALKINYPFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPASQRVSWCKFEVIVDSPKDVQTSTSSSKTLEIPSMIVTAIHIKTIINERQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESADRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHEIPKMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYVKEKKMVKKRTNHSSEEKNVDEFDLDDANVEAPNTESGKGKKGSSYSGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSKVTGVLPELLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTSIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIRSSEVSRSDVSTSLLCSVNDEERYQGCIPLTLTCPSCSGTFTCPAIFSSVYKSTDGKQEKSVDEPTSKFWNNLNCPKCPDEANAGRMTPGMIANQAKRQADRFISMYYNGLMMCDDETCNYSTRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYKQLSYFSHILDTERCLEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRDRSAYGWMQLQNFVVEFSFRVPPFELLANNVHSYFINEWFRPP 1574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27952676 27964640 + CrPI670011_02g015510.1 Cre02g1551 490832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1551 1574 MobiDBLite consensus disorder prediction 76 137 - -
Cre02g1551 1574 SUPERFAMILY Ribonuclease H-like 362 868 IPR012337 -
Cre02g1551 1574 CDD DNA_polB_alpha_exo 580 831 - -
Cre02g1551 1574 MobiDBLite consensus disorder prediction 270 287 - -
Cre02g1551 1574 MobiDBLite consensus disorder prediction 880 920 - -
Cre02g1551 1574 FunFam DNA polymerase 580 894 - -
Cre02g1551 1574 Pfam DNA polymerase family B 840 1301 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Cre02g1551 1574 Gene3D Palm domain of DNA polymerase 919 1124 IPR023211 -
Cre02g1551 1574 MobiDBLite consensus disorder prediction 1 20 - -
Cre02g1551 1574 Coils Coil 1094 1114 - -
Cre02g1551 1574 Gene3D - 407 533 - -
Cre02g1551 1574 CDD POLBc_alpha 913 1316 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Cre02g1551 1574 ProSitePatterns DNA polymerase family B signature. 1068 1076 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Cre02g1551 1574 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1546 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Cre02g1551 1574 Gene3D - 1144 1330 IPR042087 -
Cre02g1551 1574 MobiDBLite consensus disorder prediction 88 124 - -
Cre02g1551 1574 MobiDBLite consensus disorder prediction 880 894 - -
Cre02g1551 1574 NCBIfam DNA polymerase (pol2) 51 1298 - -
Cre02g1551 1574 Gene3D - 367 566 - -
Cre02g1551 1574 Pfam DNA Polymerase alpha zinc finger 1340 1544 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Cre02g1551 1574 MobiDBLite consensus disorder prediction 223 290 - -
Cre02g1551 1574 FunFam DNA polymerase 1144 1330 - -
Cre02g1551 1574 FunFam DNA polymerase 978 1027 - -
Cre02g1551 1574 Pfam DNA polymerase family B, exonuclease domain 520 774 IPR006133 -
Cre02g1551 1574 Gene3D DNA Polymerase alpha, zinc finger 1339 1533 IPR038256 -
Cre02g1551 1574 Gene3D Helix hairpin bin 978 1029 - -
Cre02g1551 1574 FunFam DNA polymerase 407 533 - -
Cre02g1551 1574 SMART polmehr3 580 1080 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre02g1551 1574 MobiDBLite consensus disorder prediction 223 240 - -
Cre02g1551 1574 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Cre02g1551 1574 MobiDBLite consensus disorder prediction 1 18 - -
Cre02g1551 1574 FunFam DNA polymerase 1339 1534 - -
Cre02g1551 1574 Gene3D - 580 896 IPR036397 GO:0003676(InterPro)
Cre02g1551 1574 PRINTS DNA-directed DNA-polymerase family B signature 937 950 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre02g1551 1574 PRINTS DNA-directed DNA-polymerase family B signature 1013 1025 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre02g1551 1574 PRINTS DNA-directed DNA-polymerase family B signature 1066 1074 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre02g1551 1574 SUPERFAMILY DNA/RNA polymerases 864 1316 IPR043502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1551 Cre-Chr2:27952676 Cre04g1149 Cre-Chr4:30073966 2.10E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1551 K02320 - csv:101211201 2803.85