Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1560 ACTCGACCAACGCCAAACTGGCCAAGACCCACCTCCGAGCTCCACGCCGCCGCCGCTCACTTCGTCCTCCTTAACGCCGCCGTCATCCTCAGCTTCGCGCCGATCTCCGCCAGTAGGAGGATCAGCGCCGTCGCTCGTGGTGGCCGCCGCCATTGGGTGTCGCCGAGTTGTCGCGGATTTAAGGACGTTTGGGTGACATTTCGGGTTTTGAGGCGTGGTTTCCACAATCGAAAAGGAATTTACTTCGATAGTTTCTGGTTTCAAATTGAGGTAAGGGCAAGAGCTATCGAGGTAATTGACAGGAGTTGTTATACTGGCCATGGGGACGGATTAGTCATGAGCTTCCGCATCACTGAGGTGCAATGGGGGTATCATTACTTAAAACCAATTCTGGATGCCGTTGTCGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGATCTTGATCATTCAGTGGATGAACTAAGGGTGCTGTTTGAAAATCGGCAACCGCTATCGAGTAAAGTATACTTTGTATTGCAAACTGAAGCATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAGTTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTTCGTTATTAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGAGATCCTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGTTGAGGACATTGATCAAATGATTGCTCTTGTAACCCGAATGCATGAGCGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTTGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGACTGAATGTTTGCCCTAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCCCCCCTTCTGGTTGGGAGCTTTGAGTCTGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAACCGATGTCTCCTCAGACAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCACTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATATTAGTAGACTGTTGCTTTCAAGTTCAGAAGATCAAACGGCCAAATTGGAAGAAAATGGTTGTGATTCGGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCCAAATACCAGTGGTGAGGATGATCCGTCTCATAGTCATAACAGGACTTCATCTACCTCTAGTGCAGTCTCAAATGCTAATCACTCTCGAGGAACTTCAGGGGAAACCAATGAAGCTACACATTTGTCAACTAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACCACCAACCACAGAGAACCAGAGCGAGAGCATCCACCGAGACTAGCTGACCCAAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGTTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGACACTTTAAGAGGTGCCACAGCTGAATTGCGGTTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCGATTGAATATTTGGTTGATTTGCTCCTCTCTGCTGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGTGCCATAGCTCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCCGGAGCAATAGGGCCCCTGGTTGAATTATTAGGCAATGGAACCCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACTATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATCCCTGTTCTAGTTGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTCTGCACTACAAGCAATAGGCATTGCAGTATGGTGCTTCAAGAAGGAGCCGTGCCACCATTGGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTGAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGACTTGCATAATTGATCCTTATTAG 2793 45.65 TRPTPNWPRPTSELHAAAAHFVLLNAAVILSFAPISASRRISAVARGGRRHWVSPSCRGFKDVWVTFRVLRRGFHNRKGIYFDSFWFQIEVRARAIEVIDRSCYTGHGDGLVMSFRITEVQWGYHYLKPILDAVVDSDIASDEELTQAFEDLDHSVDELRVLFENRQPLSSKVYFVLQTEALISKIGKFSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEEISFVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEVEDIDQMIALVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQPMSPQTTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDISRLLLSSSEDQTAKLEENGCDSVAKPSTSPSGTNVPNTSGEDDPSHSHNRTSSTSSAVSNANHSRGTSGETNEATHLSTNLTGYGSDAAGESKSEPLAAATSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSVNETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRGTCIIDPY 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28076888 28088519 - CrPI670011_02g015600.1 Cre02g1560 490841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1560 930 Gene3D - 622 920 IPR011989 -
Cre02g1560 930 SUPERFAMILY RING/U-box 308 395 - -
Cre02g1560 930 ProSiteProfiles U-box domain profile. 318 392 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre02g1560 930 MobiDBLite consensus disorder prediction 504 524 - -
Cre02g1560 930 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 393 IPR013083 -
Cre02g1560 930 SUPERFAMILY ARM repeat 639 912 IPR016024 -
Cre02g1560 930 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 803 844 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 SMART Ubox_2 322 385 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre02g1560 930 Coils Coil 262 282 - -
Cre02g1560 930 Pfam Armadillo/beta-catenin-like repeat 753 790 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 Pfam Armadillo/beta-catenin-like repeat 710 749 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 Pfam Armadillo/beta-catenin-like repeat 671 708 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 PANTHER U BOX DOMAIN-CONTAINING 125 916 - -
Cre02g1560 930 FunFam RING-type E3 ubiquitin transferase 623 918 - -
Cre02g1560 930 MobiDBLite consensus disorder prediction 587 601 - -
Cre02g1560 930 CDD RING-Ubox_PUB 320 372 IPR045210 -
Cre02g1560 930 MobiDBLite consensus disorder prediction 497 608 - -
Cre02g1560 930 MobiDBLite consensus disorder prediction 411 476 - -
Cre02g1560 930 Pfam U-box domain 319 389 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre02g1560 930 MobiDBLite consensus disorder prediction 531 569 - -
Cre02g1560 930 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 762 804 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 MobiDBLite consensus disorder prediction 429 469 - -
Cre02g1560 930 FunFam RING-type E3 ubiquitin transferase 318 393 - -
Cre02g1560 930 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 680 722 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 SMART arm_5 669 709 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 SMART arm_5 751 791 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 SMART arm_5 710 750 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 SMART arm_5 874 914 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 SMART arm_5 832 872 IPR000225 GO:0005515(InterPro)
Cre02g1560 930 SMART arm_5 792 831 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1560 Cre-Chr2:28076888 Cre04g1348 Cre-Chr4:32306183 2.10E-25 dispersed
Cre09g0743 Cre-Chr9:7269797 Cre02g1560 Cre-Chr2:28076888 1.00E-70 transposed
Cre02g1560 Cre-Chr2:28076888 Cre04g1347 Cre-Chr4:32299880 1.50E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1560 - - - 0.0