Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1577 ATGGATACCTTGTTCAGGTTGGTCAATGATCTTGAATCCTCTAATCAATATTCTTACAACAATTCTAGCAGCAGCTCAAAGAATTGTAGTGATCAAAATCATTATTACCATCTTCAAAAGCCACAATCTCAAGAATGCTTCAACAATTTGTTCATGGAGGAAGAAGACCATTTCTCTGCATCCTCTTCTTTAGATCATAATCATCACCACCAACTCCCACAGTTTCAATGTTCTACCACCGGGACTAGTACTACATCCACCGGTACTACAGCTCCAAGGGATGAGTGGTTCTCTTCCTTCACTGAAGAGTTGAACTTTGAATTCTCTGATGATTGGGCATCCACGATACTCCTCCAAACAGCCATCGCCATTGTCGACAACAACACCAGTCGAATCCAACAACTCATGTGGATGTTGAATGAGCTCGGTTCTCCATATGGGGACATTGATCAAAAGCTAGCATTCTACTTCCTTCAAGGCATGTTTAGTCGCGTCACCGACTCCGGTGCCAAGTGGTACGGGACGTTGGTAGCGGCGTCGGAGAAACGGTCGTGTTTCGAGTCGATGAGAAGAATGGTGCTGAAGTTTGAGGAGGTGAGTCCATGGATGACATTTGGTCATGTTGCTTCAAATGGTTGGATTATGGAAGCTTTACAAGGTGAAAAGAAGTTGCATATAATTGATATGGCCGGAAACTCCTCATTTTGCACTCAATGGCCCACTTTTATTGAAGCTCTCGCAACACAATCGGACCAGACTCCGCACCTTACCCTCACATTGTTGGTTGCAGCCAAATCCGACGGAACCATACGAGCCCATAAGAAATTGGTGAAAGAAATAAGTAGAAGACTAGAGAAATTCGCAAGGCTTATGGGAGTTTCCTTCAAATTCAAACCCATTTTCCACTACGGCGACGTTTCACAGTTTGATTTTACACACTTAGGCATCAAACACGACGAGGCCCTCGCCGTCAACTGTGCCGGCGCCTTGCGCTCCGTCGCCCCCCTCCACAACCGCCGCGATTTTCTCATATCCTTGTTCCGATCTTTGCGTCCCAGGATTATCACCGTCGTAGAAGAGGAGGCCGATCTCGACCCCCACAGCGGCGTTGACTTTGTCAAACACATTCAGGAGTGTTTACGCTGGTTTAGGCTTTACTTTGATTCGTTGGACGGAAGTTTCCCGACAGCCACCGACGAGCAGTTCATGCTTGAACGCGCCGCCGGACGCGCCGTCGTGGATTTGCTTGCACGCGTGCCGGCGGAGTCGGTGGAGAGGCGCGAGACCGCCGCGCGTTGGGCGTGTCGTTTGTATGACGGTGGCTTTAAACCGGTGTCGTTTAGCGAGGATGTAAATGACGATGTACGCGCGCTAGTGAGGAGGTACAAGGATGGGTGGACGATGACGGACGGGGATGGCTCCGGTGCCGGAATATTTTTGGCTTGGAAGGGGCAGCCGGTTGTTTGGGCCTCCGCGTGGGCTCCTGTAGAGCTAGACGGAGAGAAGACACATGTGTGA 1518 49.47 MDTLFRLVNDLESSNQYSYNNSSSSSKNCSDQNHYYHLQKPQSQECFNNLFMEEEDHFSASSSLDHNHHHQLPQFQCSTTGTSTTSTGTTAPRDEWFSSFTEELNFEFSDDWASTILLQTAIAIVDNNTSRIQQLMWMLNELGSPYGDIDQKLAFYFLQGMFSRVTDSGAKWYGTLVAASEKRSCFESMRRMVLKFEEVSPWMTFGHVASNGWIMEALQGEKKLHIIDMAGNSSFCTQWPTFIEALATQSDQTPHLTLTLLVAAKSDGTIRAHKKLVKEISRRLEKFARLMGVSFKFKPIFHYGDVSQFDFTHLGIKHDEALAVNCAGALRSVAPLHNRRDFLISLFRSLRPRIITVVEEEADLDPHSGVDFVKHIQECLRWFRLYFDSLDGSFPTATDEQFMLERAAGRAVVDLLARVPAESVERRETAARWACRLYDGGFKPVSFSEDVNDDVRALVRRYKDGWTMTDGDGSGAGIFLAWKGQPVVWASAWAPVELDGEKTHV 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28305206 28308716 - CrPI670011_02g015770.1 Cre02g1577 490858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1577 505 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 85 493 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Cre02g1577 505 Pfam GRAS domain family 115 493 IPR005202 -
Cre02g1577 505 ProSiteProfiles GRAS family profile. 104 494 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1577 Cre-Chr2:28305206 Cre04g1376 Cre-Chr4:32593805 6.00E-144 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53163 PF03514 GRAS 5.70E-87 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1577 K27743 - csv:101210294 805.438