Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g1586 | ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCGGCCACAATGTTCATGAACAATAACACGGCCAATTGCCCTCAACTCCCAGTCGTCCAACCGCCGTATTTCTCCGATTTCTCCCCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGGCGGAGCGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAGCCAATAGAAATAGACCCGGAGGCAATAAAGGCGCCGAAGCGGCGGAACGTGAGAATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGCGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGTTGGTGCCCGGCGGGACGAAGATGGACACGGCGTCGATGCTTGACGAAGCGGTGCATTATGTGAAGTTCTTGAAGAGGCAAGTCCAGACGTTGGAGCAGGCTGGATTTCATAATAATAATTTTAATTTCGTGAATTCTGCAAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCATTCATGA | 609 | 52.87 | MDDIDILKSTLSPSDMSSATMFMNNNTANCPQLPVVQPPYFSDFSPPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNFNFVNSANLNYSSALFKACQIMPASLQMHS | 202 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 28515524 | 28516132 | - | CrPI670011_02g015860.1 | Cre02g1586 | 490867 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g1586 | 202 | FunFam | BHLH transcription factor | 110 | 174 | - | - | |
Cre02g1586 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 111 | 166 | IPR036638 | GO:0046983(InterPro) | |
Cre02g1586 | 202 | Gene3D | - | 106 | 173 | IPR036638 | GO:0046983(InterPro) | |
Cre02g1586 | 202 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 107 | 156 | IPR011598 | GO:0046983(InterPro) | |
Cre02g1586 | 202 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 70 | 185 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g1586 | 202 | Pfam | Helix-loop-helix DNA-binding domain | 116 | 157 | IPR011598 | GO:0046983(InterPro) | |
Cre02g1586 | 202 | CDD | bHLH_AtIND_like | 108 | 164 | - | - | |
Cre02g1586 | 202 | SMART | finulus | 113 | 162 | IPR011598 | GO:0046983(InterPro) | |
Cre02g1586 | 202 | Coils | Coil | 146 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1586 | Cre-Chr2:28515524 | Cre08g1546 | Cre-Chr8:28107261 | 5.20E-38 | dispersed | |
Cre02g1586 | Cre-Chr2:28515524 | Cre05g2188 | Cre-Chr5:33610785 | 1.50E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53164 | PF00010 | HLH | 7.00E-07 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g1586 | - | - | - | 0.0 |