Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1586 ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCGGCCACAATGTTCATGAACAATAACACGGCCAATTGCCCTCAACTCCCAGTCGTCCAACCGCCGTATTTCTCCGATTTCTCCCCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGGCGGAGCGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAGCCAATAGAAATAGACCCGGAGGCAATAAAGGCGCCGAAGCGGCGGAACGTGAGAATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGCGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGTTGGTGCCCGGCGGGACGAAGATGGACACGGCGTCGATGCTTGACGAAGCGGTGCATTATGTGAAGTTCTTGAAGAGGCAAGTCCAGACGTTGGAGCAGGCTGGATTTCATAATAATAATTTTAATTTCGTGAATTCTGCAAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCATTCATGA 609 52.87 MDDIDILKSTLSPSDMSSATMFMNNNTANCPQLPVVQPPYFSDFSPPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNFNFVNSANLNYSSALFKACQIMPASLQMHS 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28515524 28516132 - CrPI670011_02g015860.1 Cre02g1586 490867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1586 202 FunFam BHLH transcription factor 110 174 - -
Cre02g1586 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 166 IPR036638 GO:0046983(InterPro)
Cre02g1586 202 Gene3D - 106 173 IPR036638 GO:0046983(InterPro)
Cre02g1586 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 156 IPR011598 GO:0046983(InterPro)
Cre02g1586 202 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 70 185 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1586 202 Pfam Helix-loop-helix DNA-binding domain 116 157 IPR011598 GO:0046983(InterPro)
Cre02g1586 202 CDD bHLH_AtIND_like 108 164 - -
Cre02g1586 202 SMART finulus 113 162 IPR011598 GO:0046983(InterPro)
Cre02g1586 202 Coils Coil 146 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1586 Cre-Chr2:28515524 Cre08g1546 Cre-Chr8:28107261 5.20E-38 dispersed
Cre02g1586 Cre-Chr2:28515524 Cre05g2188 Cre-Chr5:33610785 1.50E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53164 PF00010 HLH 7.00E-07 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1586 - - - 0.0