Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1612 ATGTCACAACAAGACTACCAACAAGCGGCGGCGGCAGCGGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAACCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACCGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTTGCCATGCAGCTTTTTCTGATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCATCACCACCATCACCCTCAACATGTACATGTCGGATCAGTTGGGTCCTCCAATCCACTGGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCACAAGAATTATTAGAGGAATTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAAAAATAATAATCATGATAACAAATTTAATAATAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGGCGGCGACGGTACCGGAGTTTCTTCCTCTTCGACAAAGGATCATCAGCCAGCTTTGTCAGCAGCTGATAGGATTGACCATCAAAGAAGGAAGGTCAAACTGTTATCTATGCTTGATGAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTAGTAAATTCATTCGACGAGGTGATGGGGTTTGGAGCGGCGGTGCCATACACATCGTTGGCGCAAAAGGCGATGTCGAGACATTTCAGGTGTCTAAAGGACGTTATATCAGCGCAGTTGAAGCATAGTTGCGAGATGTTGGGAGAGAAAGATGGAGGAGTAAGTGGAAGAGCCTCAGGAATAACAAAGGGTGAGACTCCAAGGCTAAAGCTCTTGGAGCAAAGCCTTAGGCAGCAACGAGCTTTCCACCAAATGGGCATTATGGAACAAGAAGCTTGGCGTCCCCAACGCGGTTTACCCGAACGCTCTGTCAACATCTTGCGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCTAGCGATGCTGATAAACATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAACAAGATGATGATGATGATGATAATACGGATGAAGACACACAAACCAACTCTCAACAAATTACCACTAATAATAATCCTCTTTCACAAACTCCAACGCCGCCTACTTCCTCCGCCGCACCACCACCCCCCTCCTCCTCCGCCGCCTCTCCACCCAAAATACCACCCGATCACCCTTCACCCTTCTCCGCCGCCGCTACCCACTGCTTTCCGGCTACCCATTATGACTCAGACCTCCACGACACGTGTCGTCGCCTCACCGTTCTCCCTGCACCTGATCTTCAATTCGGGACCACAACCTCTTCTGCCACGTCTGACATCCCCGGCCCCACCACCCTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCATGCCGGAAATATCCCCGATAAAACCTCTTCTTTCTCCCTCAGATCCGAGTTTGGAGGCTGTTAG 1971 50.43 MSQQDYQQAAAAAAAAGFFTPFCNGYDRSSTTHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPPPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHHPQHVHVGSVGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNNNHDNKFNNKSNLPSNSNSHGGGGDGTGVSSSSTKDHQPALSAADRIDHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDEVMGFGAAVPYTSLAQKAMSRHFRCLKDVISAQLKHSCEMLGEKDGGVSGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKQDDDDDDNTDEDTQTNSQQITTNNNPLSQTPTPPTSSAAPPPPSSSAASPPKIPPDHPSPFSAAATHCFPATHYDSDLHDTCRRLTVLPAPDLQFGTTTSSATSDIPGPTTLIRFGTTAGDVSLTLGLRHAGNIPDKTSSFSLRSEFGGC 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28859874 28865780 - CrPI670011_02g016120.1 Cre02g1612 490893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1612 656 MobiDBLite consensus disorder prediction 263 313 - -
Cre02g1612 656 MobiDBLite consensus disorder prediction 132 148 - -
Cre02g1612 656 MobiDBLite consensus disorder prediction 129 153 - -
Cre02g1612 656 MobiDBLite consensus disorder prediction 519 538 - -
Cre02g1612 656 Gene3D - 438 500 - -
Cre02g1612 656 Pfam Associated with HOX 239 379 IPR006563 -
Cre02g1612 656 CDD homeodomain 435 496 IPR001356 GO:0003677(InterPro)
Cre02g1612 656 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 193 523 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre02g1612 656 MobiDBLite consensus disorder prediction 272 305 - -
Cre02g1612 656 SMART prehox3 233 380 IPR006563 -
Cre02g1612 656 MobiDBLite consensus disorder prediction 504 518 - -
Cre02g1612 656 SUPERFAMILY Homeodomain-like 436 502 IPR009057 -
Cre02g1612 656 ProSiteProfiles 'Homeobox' domain profile. 432 495 IPR001356 GO:0003677(InterPro)
Cre02g1612 656 SMART HOX_1 435 499 IPR001356 GO:0003677(InterPro)
Cre02g1612 656 FunFam BEL1-like homeodomain protein 4 438 500 - -
Cre02g1612 656 MobiDBLite consensus disorder prediction 56 77 - -
Cre02g1612 656 MobiDBLite consensus disorder prediction 503 570 - -
Cre02g1612 656 MobiDBLite consensus disorder prediction 539 564 - -
Cre02g1612 656 Pfam Homeobox KN domain 452 491 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1612 Cre-Chr2:28859874 Cre04g1254 Cre-Chr4:31285032 1.10E-129 dispersed
Cre02g1612 Cre-Chr2:28859874 Cre02g2551 Cre-Chr2:38742831 9.80E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53167 PF07526 POX 7.10E-52 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1612 - - - 0.0