Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1647 ATGTCATCATCAAATTCACCATGTGCGGCGTGCAAAATCCAGAGAAGAAAATGCACACAAGAATGCGTATTTGCGCCATACTTCCCACCGGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGTGCAAGTAACGTAGCCAAACTTTTAAACGAACTGAACGCAACACAACGTGAAGACGCGGTTAATTCATTAGCCTACGAAGCCGAGTTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGCTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTGGCCTCTTATATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCTTTACTTCCCTACAATATCTCCCCTATGTTAGCCATTCCCCCTTCCTCCGCCCCTGGCTCTTCCCAACAGATGCTCATTCCTCCTCAACACCAAATGCAGCAGCAGCAGCAGCAGTTATTCGAGGCTCAACAATTGGCTGCGGCTGTAGCCGCCAGAGAGCAACAAGAAATGTTCAGAGCTTATGAGCATAAACAATCCCACCACCACCAACAACAACAACAACGCCAACATGAGCTTTTGAGATTCAATGGGTTTGATGCTGGTGGTGGATTTAATAATCAAATGAATTCTTCTCCCTCTAATTTGACTTTGGGGACTTTTGTTGATAACACCTACCAAATTCAAACACAACCTGAACATTCACATTCGCATTCCCATTCACATTCGCATTCGCATTCCCCGCTTCAAGTACAGCTGTTTCTTCAACCTCAACAAACTCAGCTTGATCAATCACAGCACCCTCATCCACATCAATCCCACAAGCCTGAAACTACTCCTGCTGATGATGGTAGGAATAATAATATTAACATTGGCCCCTCTTGTTAA 951 45.64 MSSSNSPCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPQPPTPTPSSSALLPYNISPMLAIPPSSAPGSSQQMLIPPQHQMQQQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQSHHHQQQQQRQHELLRFNGFDAGGGFNNQMNSSPSNLTLGTFVDNTYQIQTQPEHSHSHSHSHSHSHSPLQVQLFLQPQQTQLDQSQHPHPHQSHKPETTPADDGRNNNINIGPSC 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29395269 29396219 + CrPI670011_02g016470.1 Cre02g1647 490928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1647 316 Coils Coil 86 106 - -
Cre02g1647 316 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cre02g1647 316 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 200 - -
Cre02g1647 316 MobiDBLite consensus disorder prediction 280 316 - -
Cre02g1647 316 MobiDBLite consensus disorder prediction 251 270 - -
Cre02g1647 316 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1647 Cre-Chr2:29395269 Cre11g1551 Cre-Chr11:24820525 1.40E-45 dispersed
Cre02g1647 Cre-Chr2:29395269 Cre10g1536 Cre-Chr10:29334984 3.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53175 PF03195 LOB 2.50E-41 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1647 - - - 0.0