Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g1647 | ATGTCATCATCAAATTCACCATGTGCGGCGTGCAAAATCCAGAGAAGAAAATGCACACAAGAATGCGTATTTGCGCCATACTTCCCACCGGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGTGCAAGTAACGTAGCCAAACTTTTAAACGAACTGAACGCAACACAACGTGAAGACGCGGTTAATTCATTAGCCTACGAAGCCGAGTTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGCTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTGGCCTCTTATATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCTTTACTTCCCTACAATATCTCCCCTATGTTAGCCATTCCCCCTTCCTCCGCCCCTGGCTCTTCCCAACAGATGCTCATTCCTCCTCAACACCAAATGCAGCAGCAGCAGCAGCAGTTATTCGAGGCTCAACAATTGGCTGCGGCTGTAGCCGCCAGAGAGCAACAAGAAATGTTCAGAGCTTATGAGCATAAACAATCCCACCACCACCAACAACAACAACAACGCCAACATGAGCTTTTGAGATTCAATGGGTTTGATGCTGGTGGTGGATTTAATAATCAAATGAATTCTTCTCCCTCTAATTTGACTTTGGGGACTTTTGTTGATAACACCTACCAAATTCAAACACAACCTGAACATTCACATTCGCATTCCCATTCACATTCGCATTCGCATTCCCCGCTTCAAGTACAGCTGTTTCTTCAACCTCAACAAACTCAGCTTGATCAATCACAGCACCCTCATCCACATCAATCCCACAAGCCTGAAACTACTCCTGCTGATGATGGTAGGAATAATAATATTAACATTGGCCCCTCTTGTTAA | 951 | 45.64 | MSSSNSPCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPQPPTPTPSSSALLPYNISPMLAIPPSSAPGSSQQMLIPPQHQMQQQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQSHHHQQQQQRQHELLRFNGFDAGGGFNNQMNSSPSNLTLGTFVDNTYQIQTQPEHSHSHSHSHSHSHSPLQVQLFLQPQQTQLDQSQHPHPHQSHKPETTPADDGRNNNINIGPSC | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 29395269 | 29396219 | + | CrPI670011_02g016470.1 | Cre02g1647 | 490928 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g1647 | 316 | Coils | Coil | 86 | 106 | - | - | |
Cre02g1647 | 316 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Cre02g1647 | 316 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 200 | - | - | |
Cre02g1647 | 316 | MobiDBLite | consensus disorder prediction | 280 | 316 | - | - | |
Cre02g1647 | 316 | MobiDBLite | consensus disorder prediction | 251 | 270 | - | - | |
Cre02g1647 | 316 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1647 | Cre-Chr2:29395269 | Cre11g1551 | Cre-Chr11:24820525 | 1.40E-45 | dispersed | |
Cre02g1647 | Cre-Chr2:29395269 | Cre10g1536 | Cre-Chr10:29334984 | 3.30E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53175 | PF03195 | LOB | 2.50E-41 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g1647 | - | - | - | 0.0 |