Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1670 ATGATACTCTCAGAGCCCCCAAAGAGTAACAACGCCACCAAATTAATGCACATCAAACAATTCTTTGGCTTCTCTCACTCCTCTTCTTCTAAATCCCTCCACTCCTCTTCTTCCTTTCCCAACTCCGCCCGCCGGAGACTCCCGCCGTCCAGCTATGACCCTTCCCTGTCGGCGGCCATGGAAGAGGCCATCATTAACTCCGAACCCATCATCACCAAATGGGACCCTGATTCTTCTGAGTTCAACAGAATCACCTTCCTCTTCCGCCATGGCCGAGCCGAATCCGACGAGTTCCTCAACTCCGTCAACAGCCTCCGACGAGCAATGGACTTTTTCATATTGGCAAATTCCACCTCATCCGTCCTTGTTATTGCTCAGAAGTTGATGCAGGCCGCCATGAGACGACTCGAGAAGGAATTTTACCAAATTTTGAGTGAGAATCGCCAGAATCTAGACCCTGAATCCATCTCCAGCACGTCCTCCGACCGGTCGACGGTCGAAGGAGAAACCGTTGGGGATTCCGTCGCCGAGTTCGATAGAGTTTCGGCCGATTTGAAATCGATTGCGGATTGTATGATTGATTCTGGGTATGGGAAAGAGTGTGTTAAAATCTATAAAGTAATCCGAAAATCGATTGTTGATGAAACTCTGTGCCACCTTGGAACAGAGAAATTCAAAATTTCGAGAATTCTGAAATGGAATTGGGATTCGCTCGAGCAGATAATCAAGACTTGGATGAATTCGGTTAAGATCGCTGTGAATACTCTGTTTCGTGGCGAGAAAATTCTGTGCGACCATGTTTTTTCGAGATCGGAAAGAATCAGAGAGTCCTGTTTTTCTGAGATCACAAAAGAAGGTGCAATCACTTTGTTTAAATTCCCGGAATTAGTCGCAAAAGGGAAGAAAGATTCCAACAAAATCTTTCTATTAATGGAGTTTCACGAGGCGAATTCCGACGTATTGCCGGAAATTGAAGTCATATTCGACTCTGTTTCAACTTCCGCCATTATAACGCAGGCTCAAACATCGATGGCGAAACTCGCGGATTCAATCCGCGACATTCTTTCTGAATTTGAATCATCAATTCAAAGAGATTCATCCAAAAATCCGACCCCCGGCAGCGGAATCCACCCACTAACCCGATCAGCAATGAGCTACATCTCGTCTCTTGGCGATTACGCCGGTACCCTCTCCGACATCCTCACCGTTGAAAACTCTCTGATTCCACCGTCGTACATGGAAACCATCGCCGCCGACGATGCACTGTCGTCGCCAGTGGCGGCGCAACTGGGGTGGCTGATTCTAGTCCTTCTCTGCAAACTAGACACAAAAGCAGCGGTGTACAGAGACATATCGTTATCGTATTTATTCCTAGCGAACAATTTGAATTTCATTGTGAAGACGGTGGCGACAACAAATCTAAAGACGCTAATCGGCAGCGAGTGGGTGGCGAATCACCAGAGCAAAGTGAAGGTGTATGCAGCGAATTACGAAACGACGGCGTGGAACAGAGTGATGAAGTCGTTGCCGGAGGGGGAGTCGGAGGAAGTGGGGTCGGCGGCGGAAGGGTTCAAGAGGTTTAATGCGGCGTTTGAAGAAGCGTATCGGAAGCAGAGGTCGTGGAGAGTGGAGGATGGAAATTTGAGAGACGAATTGAAGATGTCGATAGCCAAGAAAATTCTGCCGATTTACAGAGAGTTTTACGATGGGTGTATTGAGAAAGTGAATGTGGGTGTCAGATTTTCGCCGGATGATTTGGGGAATTATTTGTCGGATTTGTTTCATGGAGTTTCTTCATCGGCAACTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTAA 1848 47.08 MILSEPPKSNNATKLMHIKQFFGFSHSSSSKSLHSSSSFPNSARRRLPPSSYDPSLSAAMEEAIINSEPIITKWDPDSSEFNRITFLFRHGRAESDEFLNSVNSLRRAMDFFILANSTSSVLVIAQKLMQAAMRRLEKEFYQILSENRQNLDPESISSTSSDRSTVEGETVGDSVAEFDRVSADLKSIADCMIDSGYGKECVKIYKVIRKSIVDETLCHLGTEKFKISRILKWNWDSLEQIIKTWMNSVKIAVNTLFRGEKILCDHVFSRSERIRESCFSEITKEGAITLFKFPELVAKGKKDSNKIFLLMEFHEANSDVLPEIEVIFDSVSTSAIITQAQTSMAKLADSIRDILSEFESSIQRDSSKNPTPGSGIHPLTRSAMSYISSLGDYAGTLSDILTVENSLIPPSYMETIAADDALSSPVAAQLGWLILVLLCKLDTKAAVYRDISLSYLFLANNLNFIVKTVATTNLKTLIGSEWVANHQSKVKVYAANYETTAWNRVMKSLPEGESEEVGSAAEGFKRFNAAFEEAYRKQRSWRVEDGNLRDELKMSIAKKILPIYREFYDGCIEKVNVGVRFSPDDLGNYLSDLFHGVSSSATPSSSSSSSSSSSS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29682686 29684533 - CrPI670011_02g016700.1 Cre02g1670 490951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1670 615 Gene3D Exocyst complex component Exo70 71 603 - -
Cre02g1670 615 MobiDBLite consensus disorder prediction 152 171 - -
Cre02g1670 615 Pfam Exocyst complex component Exo70 N-terminal 68 146 - -
Cre02g1670 615 MobiDBLite consensus disorder prediction 152 168 - -
Cre02g1670 615 MobiDBLite consensus disorder prediction 26 54 - -
Cre02g1670 615 PANTHER EXOCYST COMPLEX PROTEIN EXO70 41 596 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Cre02g1670 615 MobiDBLite consensus disorder prediction 26 45 - -
Cre02g1670 615 SUPERFAMILY Cullin repeat-like 69 595 IPR016159 -
Cre02g1670 615 Pfam Exo70 exocyst complex subunit C-terminal 243 592 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1670 K07195 - - csv:101221801 1027.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1670 Cre-Chr2:29682686 Cre03g0511 Cre-Chr3:3644108 1.30E-137 dispersed
Cre11g1086 Cre-Chr11:8328636 Cre02g1670 Cre-Chr2:29682686 4.60E-25 transposed
Cre10g2192 Cre-Chr10:36441995 Cre02g1670 Cre-Chr2:29682686 1.80E-140 wgd
Cre02g1670 Cre-Chr2:29682686 Cre04g0947 Cre-Chr4:28134729 7.90E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g377 . . Bda02g00802 Bda09g01492 Bpe01g00153 . Bma14g00483 . . . . . . . Sed13g1351 Cpe05g00891 . Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 Cla02g01331 Cam02g1412 Cec02g1430 Cco02g1463 Clacu02g1391 Cmu02g1351 Cre02g1670 Cone1ag0674 Cone5ag1180 Cone18ag0321 Cone11ag1266 . Csa06g01715 . Cme11g01259 Blo13g01090 Blo14g00136 Bda07g00609 . Bpe08g00122 Bpe11g00785 Bma07g00116 Bma11g00137 Sed01g0928 Cmo02g00840 Cmo20g00472 Cma02g00839 Cma20g00434 . . . . Bhi10g00657 Tan05g0340 Cmetu11g2447 . Hepe08g0821 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2361 . 12 653 EXO70 exocyst subunit family AT5G03540 75.9 1.1e-283 972.6
Cre04g1139 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 2.8e-266 914.8
Cre04g1139 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 3.1e-299 1024.2
Cre05g2361 . 14 653 EXO70 exocyst subunit family AT5G52340 74.4 1.6e-271 932.2
Cre04g1139 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.4e-176 615.9
Cre05g2361 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 3.2e-165 578.9
Cre03g0365 . 1 623 EXO70 exocyst subunit family AT5G58430 67.0 1.4e-246 849.4
Cre03g0365 . 1 622 EXO70 exocyst subunit family AT1G07000 52.5 3.9e-174 608.6
Cre07g1891 . 60 673 EXO70 exocyst subunit family AT5G13150 53.6 1.0e-175 614.0
Cre09g1672 . 111 722 EXO70 exocyst subunit family AT5G13990 54.5 6.5e-189 657.9
Cre07g1809 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.1e-216 750.0
Cre07g1809 . 9 607 EXO70 exocyst subunit family AT1G54090 61.8 3.3e-208 721.8
Cre07g1809 . 9 608 EXO70 exocyst subunit family AT3G14090 64.2 2.0e-218 755.7
Cre03g1627 . 27 664 EXO70 exocyst subunit family AT5G50380 62.0 2.2e-226 782.3
Cre03g0668 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.2e-211 733.4
Cre08g1199 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 3.0e-295 1011.1
Cre02g1670 . 58 596 EXO70 exocyst subunit family AT3G55150 50.1 1.4e-145 513.8
Cre02g1670 . 31 596 EXO70 exocyst subunit family AT2G39380 50.1 5.1e-148 521.9
Cre10g2192 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.5e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36