Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1688 ATGGTATCTGAAACTTTGATGAAGATTGTATCACCTTGCTGGAAACCCTTGGTTGAAGGCGAAAATTCCAGTAGAGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCTGGCCGCCATATTAATGGGGAATTCTCAATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGTAGCCAACTTGAGTCAGGACCACTGAGCTCATTTGAATCGGGTCCCGTTGGAACGTTTGTTGGAATTTATGATGGCCATGGAGGACCAGAAGCTGCAGAATTCATAAATGATCGTCTTTTCAATAATATGAAGACTTTTCATGGTGCAGAATTTATTCCAGAAAATCGGGGGGTATCTGCTGAAATTATTAATAAAGCATTCTTGGAGACGGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTATGAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCCATCCAATTGTCATCTGAGCACAATGCTAGTATTGAGTCTGTGAGAGAGGAGCTGCACTCGCTGCATCCCAATGATCCACAGATTGTGGTGCTAAAGCACAAGGTGTGGCGCGTGAAGGGCGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCAAGAGCCTCTTTTGCCGAAGTTCAGACTACCAGAACCATTCCACAAGCCAATACTTAAAGCCGAGCCTGCTATTGTAGTGCAGAAACTGTACCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGTAACGGGGTTGCTAGGAAACTCGTTAAAGCCGCTCTTCATGAAGCTGCAAAAAAAAGAGAAATGAGATACACAGACTTGAAGAAGATTGACCGCGGGGTAAGAAGGCATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTCGATTCGCATCTGATTAGTCGTAGTCCAAGCTACGGACCAATGCTTTCAATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG 1170 43.33 MVSETLMKIVSPCWKPLVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKTFHGAEFIPENRGVSAEIINKAFLETEEEFLSLVKKQWLMKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNQEPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGVARKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGSGILARS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29922927 29926432 + CrPI670011_02g016880.1 Cre02g1688 490969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1688 389 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Cre02g1688 389 Gene3D - 39 370 IPR036457 -
Cre02g1688 389 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
Cre02g1688 389 Pfam Protein phosphatase 2C 81 331 IPR001932 -
Cre02g1688 389 CDD PP2Cc 50 362 IPR001932 -
Cre02g1688 389 PANTHER PROTEIN PHOSPHATASE 42 361 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre02g1688 389 SUPERFAMILY PP2C-like 58 363 IPR036457 -
Cre02g1688 389 FunFam Phosphatase 2C family protein 38 372 - -
Cre02g1688 389 SMART PP2C_4 41 360 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1688 Cre-Chr2:29922927 Cre04g1677 Cre-Chr4:35085522 6.30E-141 dispersed
Cre10g2183 Cre-Chr10:36367698 Cre02g1688 Cre-Chr2:29922927 1.70E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1688 K01102 - csv:101220760 755.747