Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1689 ATGGCGACTTCGACACTGGGCGGCACCATAGGCTTCTCCCAGCCCTCGTCTTCCTCGCATATCTCAGTTTATTGCATTCCCTTTTCAACCAGCAGATTCAGTTTCTCGAGGACCATTCTTTCTCCTCTTAAGCTTGAAAAACCACCATCTGGAAGAAGAGCCAGAGCTGTAATTGCTGTGAAAATGGCTGCTGAGGCTTTTCAGGAAGTTTTTCCTCCAGCCCTCACTTCAGCTTCAGAACCACCTCCTCTCTTTGATGGAACAACGAGGCTTTACATATCTTATACATGCCCTTATGCGCAGCGTGTGTGGATTACTCGGAATTGTAAGGGTTTGCAGAATAAGATACAATTGGTTCCAATAAATCTACAGGATAGGCCATCTTGGTACATGGAAAAAGTTTACCCACCTAACAAGGTGCCAGCTCTTGAACATAATAATGAGGTCAAAGGAGAGAGTCTTGACTTAATTAAATATATTGACAGCAATTTTGAAGGGCCTTCATTATTTCCTGATGATCCGGGAAAGCGAGAGTTTGCTGAAGAGCTGATAGACTACGTGAACTCTTTCACGAAATCTGTGGTTTCTTCATTTAAAGGAGATGGAAATGAAGCTGATGTGGCATTTGACTACATCGAATCTGCTCTTTCAAAATATGGAGATGGCCCGTTTTTTCTAGGCCAGTTTAGTCTGGTGGATATAGCTTATGCTCCGTTTATTGAAAGGTTTCAGCCGTTCTTATTAGAAGTAAAAACATATGACATCACTGCTGGCAGGCCAAAACTAGCAGCTTGGATTGAGGAGATGAACAAGATCGAAGGGTACCGAAAAACAAGGGGCGATCCACGGGAACATGTTGATAGCTATAAGAAGCGATTCTTGAGCCGTTTGTGA 894 43.29 MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAVKMAAEAFQEVFPPALTSASEPPPLFDGTTRLYISYTCPYAQRVWITRNCKGLQNKIQLVPINLQDRPSWYMEKVYPPNKVPALEHNNEVKGESLDLIKYIDSNFEGPSLFPDDPGKREFAEELIDYVNSFTKSVVSSFKGDGNEADVAFDYIESALSKYGDGPFFLGQFSLVDIAYAPFIERFQPFLLEVKTYDITAGRPKLAAWIEEMNKIEGYRKTRGDPREHVDSYKKRFLSRL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29929566 29934458 + CrPI670011_02g016890.1 Cre02g1689 490970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1689 297 PANTHER GLUTATHIONE S-TRANSFERASE L1 62 296 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Cre02g1689 297 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 87 168 IPR004045 -
Cre02g1689 297 SFLD Main (cytGST) 90 271 - -
Cre02g1689 297 CDD GST_C_Lambda 173 290 - -
Cre02g1689 297 SUPERFAMILY GST C-terminal domain-like 164 293 IPR036282 -
Cre02g1689 297 Gene3D Glutaredoxin 62 165 - -
Cre02g1689 297 FunFam Glutathione S-transferase L2, chloroplastic 62 165 - -
Cre02g1689 297 Pfam Glutathione S-transferase, C-terminal domain 208 267 - -
Cre02g1689 297 SFLD Glutathione Transferase (cytosolic) 90 271 IPR040079 -
Cre02g1689 297 Gene3D - 166 297 - -
Cre02g1689 297 Pfam Glutathione S-transferase, N-terminal domain 91 167 IPR004045 -
Cre02g1689 297 SUPERFAMILY Thioredoxin-like 78 169 IPR036249 -
Cre02g1689 297 FunFam Lambda class glutathione S-transferase 166 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1689 K00799 - - csv:101220995 530.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1689 Cre-Chr2:29929566 Cre10g2181 Cre-Chr10:36357397 8.30E-85 dispersed
Cre10g2180 Cre-Chr10:36333897 Cre02g1689 Cre-Chr2:29929566 5.30E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g350 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01351 Cam02g1428 Cec02g1447 Cco02g1483 Clacu02g1410 Cmu02g1366 Cre02g1689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g0573 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 5.2e-65 244.6
Cre09g0575 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.0 6.8e-65 244.2
Cre09g0574 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.2 2.8e-58 222.2
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.8e-66 248.8
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 2.0e-64 242.7
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.9 2.5e-59 225.7
Cre09g0575 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.6e-60 229.9
Cre09g0573 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.8e-59 226.5
Cre09g0574 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.2 7.2e-53 204.5
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.7e-64 241.1
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.4e-62 235.7
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT1G02930 53.3 2.3e-57 219.2
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.3e-65 245.7
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 2.2e-63 239.2
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.8 2.5e-59 225.7
Cre09g0575 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.8e-68 255.8
Cre09g0573 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 1.7e-65 246.5
Cre09g0574 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.3 3.3e-61 232.3
Cre09g0576 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.5 9.2e-73 270.4
Cre09g0573 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.4e-48 189.5
Cre04g0857 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 3.6e-64 241.9
Cre05g0336 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 8.5e-58 220.7
Cre04g0862 . 1 222 Glutathione S-transferase Gene Family AT3G09270 52.2 2.5e-57 219.2
Cre04g0847 . 224 421 Glutathione S-transferase Gene Family AT3G09270 51.8 9.5e-57 217.2
Cre05g2601 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.9e-37 152.1
Cre07g1425 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.9 8.6e-87 317.0
Cre07g1423 . 1 214 Glutathione S-transferase Gene Family AT1G78380 70.6 1.1e-86 316.6
Cre07g1424 . 1 217 Glutathione S-transferase Gene Family AT1G78380 67.3 6.4e-82 300.8
Cre09g1687 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.9e-68 253.8
Cre07g1426 . 1 201 Glutathione S-transferase Gene Family AT1G78380 51.2 8.6e-55 210.7
Cre07g1423 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 3.8e-79 291.6
Cre07g1425 . 7 214 Glutathione S-transferase Gene Family AT1G78370 61.5 1.1e-73 273.5
Cre07g1424 . 7 216 Glutathione S-transferase Gene Family AT1G78370 57.1 3.2e-70 261.9
Cre09g1687 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.9e-64 241.1
Cre07g1423 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 1.0e-79 293.5
Cre07g1425 . 1 216 Glutathione S-transferase Gene Family AT1G78340 63.9 6.5e-79 290.8
Cre07g1424 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 6.3e-74 274.2
Cre09g1687 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.9e-63 238.4
Cre07g1423 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 4.2e-61 231.5
Cre07g1423 . 1 218 Glutathione S-transferase Gene Family AT1G17180 69.7 8.4e-90 327.0
Cre07g1425 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.5 1.7e-82 302.8
Cre07g1424 . 1 220 Glutathione S-transferase Gene Family AT1G17180 61.4 1.6e-80 296.2
Cre09g1687 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.8e-68 256.1
Cre07g1426 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.3 4.6e-56 214.9
Cre07g1423 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.1 2.4e-73 272.3
Cre07g1425 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.5 7.8e-72 267.3
Cre07g1424 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.9 6.2e-69 257.7
Cre07g1423 . 3 214 Glutathione S-transferase Gene Family AT3G43800 57.9 5.2e-71 264.6
Cre07g1425 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.5 4.9e-69 258.1
Cre07g1424 . 3 212 Glutathione S-transferase Gene Family AT3G43800 53.1 5.6e-65 244.6
Cre07g1423 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 6.7e-71 264.2
Cre07g1425 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 1.2e-67 253.4
Cre09g1687 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.0e-63 240.4
Cre07g1426 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.0 7.0e-52 201.1
Cre02g0378 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 1.1e-61 233.4
Cre05g0308 . 61 224 Glutathione S-transferase Gene Family AT2G02390 50.9 7.9e-44 174.1
Cre02g0378 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.9 3.1e-76 282.0
Cre05g0308 . 18 223 Glutathione S-transferase Gene Family AT2G02380 52.6 1.6e-56 216.5
Cre07g1161 . 35 271 Glutathione S-transferase Gene Family AT5G41210 68.4 1.5e-92 336.3
Cre07g1161 . 35 271 Glutathione S-transferase Gene Family AT5G41240 66.7 1.7e-89 327.4
Cre10g2181 . 1 235 Glutathione S-transferase Gene Family AT5G02780 66.5 1.9e-87 319.3
Cre10g2180 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.8e-83 305.4
Cre02g1689 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.8e-80 295.0
Cre02g1689 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.3e-85 313.5
Cre10g2181 . 6 233 Glutathione S-transferase Gene Family AT3G55040 60.1 2.5e-78 289.3
Cre10g2180 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 9.7e-78 287.3
Cre10g2181 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.9 7.8e-94 340.5
Cre10g2180 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 2.0e-89 325.9
Cre02g1689 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 4.0e-82 301.6
Cre02g1663 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.5e-80 296.2
Cre05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.4e-72 268.5
Cre02g1663 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 5.4e-86 314.3
Cre05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 4.3e-75 278.1
Cre05g1317 . 9 274 Glutathione S-transferase Gene Family AT5G16710 68.3 7.7e-103 370.5
Cre02g1663 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 5.4e-72 268.1
Cre11g2016 . 510 765 Glutathione S-transferase Gene Family AT1G77290 69.5 7.2e-104 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000664 2 7 0 1 1 2 3 2 3 3 1 3 2 4 4 3 3 4 2 2 4 3 3 4 5 3 2 8 6 4 94