Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1692 ATGGGATGGTTTCTCTGTTCTGGAAGTTCAAATAAGAAGGAAAAACATCAGCAGCTGCAGGTTCAGAAGAAGGACAATGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAGCCGACATTTAATGGGAAGAACGAGGCTCTGAAAGATGGAGGTTCTGATCAAATTGCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCCGACTGTCTTTTGGGTGAAGGAGGTTTTGGTCAAGTTTATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTTCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCACCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGATCGTTGGAAGACCATTTACATGATCTCCCACCTGATAAAAGACGACTTGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAGATTACCATCCTAAGCTTTCCGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACATATGGATACTGTGCTCCTGAGTATGCAATGACAGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTACTCGAAATTATTACTGGGAGAAAAGCTATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCTCAACCCTTATTTAAAGACAGAAGGAAATTTTCGCAGATGGCCGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCTGATGTTGTCACAGCCCTTTCATATCTTGCTTCCCAAAAATACAACCCGGAAACTCAGCCAGTTCAAAGCGCTCGCAGTAGCTCGTCCACACCTAGGTCTTCTAGAAGAGAACTGTGA 1149 42.91 MGWFLCSGSSNKKEKHQQLQVQKKDNDPIPSTSEKLMVKPTFNGKNEALKDGGSDQIAAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKRRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALSYLASQKYNPETQPVQSARSSSSTPRSSRREL 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29975035 29979238 + CrPI670011_02g016920.1 Cre02g1692 490973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1692 382 FunFam Serine/threonine-protein kinase PBS1 153 368 - -
Cre02g1692 382 Pfam Protein tyrosine and serine/threonine kinase 80 347 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g1692 382 FunFam Serine/threonine-protein kinase PBS1 47 152 - -
Cre02g1692 382 SUPERFAMILY Protein kinase-like (PK-like) 64 371 IPR011009 -
Cre02g1692 382 MobiDBLite consensus disorder prediction 1 31 - -
Cre02g1692 382 CDD STKc_IRAK 82 350 - -
Cre02g1692 382 Gene3D Transferase(Phosphotransferase) domain 1 153 374 - -
Cre02g1692 382 MobiDBLite consensus disorder prediction 361 382 - -
Cre02g1692 382 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Cre02g1692 382 PANTHER OS07G0668900 PROTEIN 15 374 - -
Cre02g1692 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g1692 382 MobiDBLite consensus disorder prediction 361 375 - -
Cre02g1692 382 SMART serkin_6 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1692 382 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1692 382 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1692 Cre-Chr2:29975035 Cre05g0718 Cre-Chr5:6341480 2.40E-161 dispersed
Cre10g2179 Cre-Chr10:36331013 Cre02g1692 Cre-Chr2:29975035 4.10E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63876 PF07714 PK_Tyr_Ser-Thr 1.90E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1692 - - - 0.0