Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1701 ATGATGTTGGATCTCAACGATTCGATTATGAACCGTGACGAAACGACGGCGGAGCGGATCGTAATGGAAGATTCAGAGACTTCAAATTCCTCCGTTGTTAATGCTGCCGACGAGGTTTCCAATAGCAGAGATGAAGATTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAGTTCCGGCGGCGGCAGCGGCGGCGGCGCATCCCCGGAATTGGTGACTCAGACACTTTTTCCGGTGGTTGGAGGATGGGGGGATTCTGGGTCTCCAGTGCCCAGAACCCATTGGTTGAACTTGTCGTCGACGGCGGATTCCGGCGGCGGCGGTGGACAGCCGGAGTTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGCTCCCGGAGCTCGCAGTACCGAGGAGTTACCTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCAGCAATAAAGTTTAGAGGAGTCGATGCAGACATAAACTTCAACATAAGTGATTACGATGAAGATATGAAACACATGAAGAATCTAAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAACTAAGAGGACTTTCTCTTCAAAAATATGGAAGATGGGAAAATCAAATGAGCCAAATTATTGGGAAGAATGGAATTGAGCAGAGGTCTTACAAAGGGGAAACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTCCTCAAAAACTCAACATTGAGAGACCAAAGAATGAAAACAATGGTTATGCATGTGGTGTGGCTGGCCAACAACCTCATATTCCTCCTTCTATGTGGTCTAGTTTTTACTCTGGTTTTTTAGCAGATAATGAGGAAAGAGGGAGAGAAAAGAGAAACGACTCAACGAAGAGCCCTACAAGTTGGGGATGGCAAATGCCAACGTCGACATCGATGTCGATGCCAATGCAAATTCAAGGAAATATGAGTGGAAAAAGCAATTACAAGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATGAGTAGTAATGGAATAATAGCAAGAGAAGAAGCTCATGTTTCCAAGATTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATGCCCAAAACAACACTGCCCTCCACAGTACTCACTGCCCCAATATTTCTTGA 1341 43.77 MMLDLNDSIMNRDETTAERIVMEDSETSNSSVVNAADEVSNSRDEDSSVLIFDILKRESSGGGSGGGASPELVTQTLFPVVGGWGDSGSPVPRTHWLNLSSTADSGGGGGQPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKHMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWENQMSQIIGKNGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHFSNSPQKLNIERPKNENNGYACGVAGQQPHIPPSMWSSFYSGFLADNEERGREKRNDSTKSPTSWGWQMPTSTSMSMPMQIQGNMSGKSNYKNNNNNNNNNNNNNNNNNNMSSNGIIAREEAHVSKIAASSGFSSSSNFGSLYAQNNTALHSTHCPNIS 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30101729 30105584 + CrPI670011_02g017010.1 Cre02g1701 490982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1701 446 CDD AP2 137 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1701 446 MobiDBLite consensus disorder prediction 335 400 - -
Cre02g1701 446 SMART rav1_2 137 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1701 446 MobiDBLite consensus disorder prediction 22 38 - -
Cre02g1701 446 MobiDBLite consensus disorder prediction 92 112 - -
Cre02g1701 446 MobiDBLite consensus disorder prediction 22 41 - -
Cre02g1701 446 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677(InterPro)
Cre02g1701 446 MobiDBLite consensus disorder prediction 347 400 - -
Cre02g1701 446 MobiDBLite consensus disorder prediction 93 107 - -
Cre02g1701 446 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1701 446 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 261 - -
Cre02g1701 446 Pfam AP2 domain 137 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1701 446 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g1701 446 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1701 Cre-Chr2:30101729 Cre02g2381 Cre-Chr2:37234669 5.10E-70 dispersed
Cre10g2174 Cre-Chr10:36291159 Cre02g1701 Cre-Chr2:30101729 1.20E-70 wgd
Cre02g1701 Cre-Chr2:30101729 Cre04g0972 Cre-Chr4:28342347 6.40E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53177 PF00847 AP2 6.20E-10 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1701 K09284 - csv:101204131 706.057