Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1703 ATGACGAGCCTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCAACTTCCTCGAAACTCATCCTGGCGCTTATACAACCACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGAATTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCGTCTGTGACGGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGGTTACTTCGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGACGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTGACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 1623 45.59 MTSLRFLFSNGVVLQGSEAPPVANFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERIGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIGYFDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30118535 30132381 + CrPI670011_02g017030.1 Cre02g1703 490984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1703 540 Pfam Amino-transferase class IV 31 305 IPR001544 GO:0003824(InterPro)
Cre02g1703 540 Gene3D - 30 102 IPR043131 -
Cre02g1703 540 SUPERFAMILY Histone-fold 397 498 IPR009072 GO:0046982(InterPro)
Cre02g1703 540 Gene3D Histone, subunit A 390 518 IPR009072 GO:0046982(InterPro)
Cre02g1703 540 MobiDBLite consensus disorder prediction 487 513 - -
Cre02g1703 540 MobiDBLite consensus disorder prediction 380 394 - -
Cre02g1703 540 ProSitePatterns NF-YB/HAP3 subunit signature. 431 447 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g1703 540 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 23 311 IPR036038 GO:0003824(InterPro)
Cre02g1703 540 FunFam Nuclear factor Y, subunit B1 390 489 - -
Cre02g1703 540 PRINTS CCAAT-binding transcription factor subunit A signature 428 446 - -
Cre02g1703 540 PRINTS CCAAT-binding transcription factor subunit A signature 447 465 - -
Cre02g1703 540 PRINTS CCAAT-binding transcription factor subunit A signature 466 484 - -
Cre02g1703 540 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 361 - -
Cre02g1703 540 MobiDBLite consensus disorder prediction 370 396 - -
Cre02g1703 540 Gene3D - 171 360 IPR043132 -
Cre02g1703 540 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 400 464 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1703 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1703 Cre-Chr2:30118535 Cre10g0657 Cre-Chr10:6228589 2.70E-41 dispersed
Cre03g1968 Cre-Chr3:36715922 Cre02g1703 Cre-Chr2:30118535 9.80E-25 transposed
Cre09g0581 Cre-Chr9:5471554 Cre02g1703 Cre-Chr2:30118535 5.50E-35 transposed
Cre10g2172 Cre-Chr10:36251410 Cre02g1703 Cre-Chr2:30118535 1.00E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g332 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01361 Cam02g1439 Cec02g1460 Cco02g1497 Clacu02g1419 Cmu02g1376 Cre02g1703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g0675 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.9e-49 190.7
Cre02g1245 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.9e-38 154.5
Cre10g0657 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.7e-37 151.4
Cre10g0675 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.8e-51 198.4
Cre07g1297 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.3e-37 152.9
Cre02g1245 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.5e-56 216.1
Cre10g0657 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.4 4.3e-51 198.0
Cre07g1297 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.4e-47 184.1
Cre10g2172 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.5e-43 172.9
Cre02g1703 . 382 500 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.9e-43 172.6
Cre09g0581 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.1e-37 152.5
Cre02g1703 . 369 485 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 6.5e-49 190.7
Cre10g2172 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.2e-48 188.3
Cre02g1245 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.5e-42 169.5
Cre10g0657 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 1.0e-41 166.8
Cre07g1297 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.8e-41 164.9
Cre09g0581 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.4e-38 156.4
Cre09g0581 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cre10g0657 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.7e-39 159.5
Cre02g1245 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.4e-39 157.5
Cre07g1297 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.4e-38 154.5
Cre10g2172 . 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.0 8.3e-61 230.3
Cre02g1703 . 375 534 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 4.0e-55 211.5
Cre02g1245 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.4e-44 176.4
Cre07g1297 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.3e-41 164.9
Cre10g0657 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 7.3e-41 164.1
Cre09g0581 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.4e-37 150.6
Cre07g1297 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.3e-44 176.0
Cre02g1245 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 4.0e-44 175.3
Cre10g2172 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.4e-41 166.8
Cre10g0657 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.4e-41 166.0
Cre02g1703 . 395 489 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.9e-39 159.1
Cre09g0581 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.9e-39 159.1
Cre02g1245 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.6e-52 201.4
Cre10g0657 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 5.6e-50 194.5
Cre07g1297 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 9.2e-45 177.2
Cre02g1703 . 395 505 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.9e-42 169.5
Cre10g2172 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 5.6e-42 167.9
Cre09g0581 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.3e-38 156.8
Cre10g2172 . 12 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.5 2.6e-57 218.8
Cre02g1703 . 380 533 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.4 4.1e-55 211.5
Cre02g1245 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.9e-45 178.7
Cre10g0657 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.5e-41 166.4
Cre07g1297 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.5e-41 164.1
Cre09g0581 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.7e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006362 1 6 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53178 PF01063 Aminotran_4 7.80E-15 No_clan Cre TF