Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1703 ATGACGAGCCTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCAACTTCCTCGAAACTCATCCTGGCGCTTATACAACCACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGAATTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCGTCTGTGACGGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGGTTACTTCGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGACGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTGACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 1623 45.59 MTSLRFLFSNGVVLQGSEAPPVANFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERIGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIGYFDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30118535 30132381 + CrPI670011_02g017030.1 Cre02g1703 490984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1703 540 Pfam Amino-transferase class IV 31 305 IPR001544 GO:0003824(InterPro)
Cre02g1703 540 Gene3D - 30 102 IPR043131 -
Cre02g1703 540 SUPERFAMILY Histone-fold 397 498 IPR009072 GO:0046982(InterPro)
Cre02g1703 540 Gene3D Histone, subunit A 390 518 IPR009072 GO:0046982(InterPro)
Cre02g1703 540 MobiDBLite consensus disorder prediction 487 513 - -
Cre02g1703 540 MobiDBLite consensus disorder prediction 380 394 - -
Cre02g1703 540 ProSitePatterns NF-YB/HAP3 subunit signature. 431 447 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre02g1703 540 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 23 311 IPR036038 GO:0003824(InterPro)
Cre02g1703 540 FunFam Nuclear factor Y, subunit B1 390 489 - -
Cre02g1703 540 PRINTS CCAAT-binding transcription factor subunit A signature 428 446 - -
Cre02g1703 540 PRINTS CCAAT-binding transcription factor subunit A signature 447 465 - -
Cre02g1703 540 PRINTS CCAAT-binding transcription factor subunit A signature 466 484 - -
Cre02g1703 540 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 361 - -
Cre02g1703 540 MobiDBLite consensus disorder prediction 370 396 - -
Cre02g1703 540 Gene3D - 171 360 IPR043132 -
Cre02g1703 540 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 400 464 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1703 Cre-Chr2:30118535 Cre10g0657 Cre-Chr10:6228589 2.70E-41 dispersed
Cre03g1968 Cre-Chr3:36715922 Cre02g1703 Cre-Chr2:30118535 9.80E-25 transposed
Cre09g0581 Cre-Chr9:5471554 Cre02g1703 Cre-Chr2:30118535 5.50E-35 transposed
Cre10g2172 Cre-Chr10:36251410 Cre02g1703 Cre-Chr2:30118535 1.00E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53178 PF01063 Aminotran_4 7.80E-15 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1703 - - - 0.0