Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1708 ATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGACCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGTAGTATGGTATACGAAGCAAATGCTCGACTGCGAGATCCAGTTTACGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAACATGCAACAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTACATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA 546 52.56 MSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTTCFLDDATLSSPWEPLWT 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30223707 30224856 + CrPI670011_02g017080.1 Cre02g1708 490989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1708 181 Pfam Lateral organ boundaries (LOB) domain 30 127 IPR004883 -
Cre02g1708 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 139 - -
Cre02g1708 181 Coils Coil 109 143 - -
Cre02g1708 181 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Cre02g1708 181 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1708 Cre-Chr2:30223707 Cre03g0550 Cre-Chr3:4254034 6.20E-51 dispersed
Cre02g1708 Cre-Chr2:30223707 Cre02g2394 Cre-Chr2:37371432 1.10E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53179 PF03195 LOB 1.50E-40 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1708 - - - 0.0