Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1708 ATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGACCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGTAGTATGGTATACGAAGCAAATGCTCGACTGCGAGATCCAGTTTACGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAACATGCAACAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTACATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA 546 52.56 MSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTTCFLDDATLSSPWEPLWT 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30223707 30224856 + CrPI670011_02g017080.1 Cre02g1708 490989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1708 181 Pfam Lateral organ boundaries (LOB) domain 30 127 IPR004883 -
Cre02g1708 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 139 - -
Cre02g1708 181 Coils Coil 109 143 - -
Cre02g1708 181 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Cre02g1708 181 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1708 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1708 Cre-Chr2:30223707 Cre03g0550 Cre-Chr3:4254034 6.20E-51 dispersed
Cre02g1708 Cre-Chr2:30223707 Cre02g2394 Cre-Chr2:37371432 1.10E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g318 . Blo03g01266 . . . . . . . . . . . . . Cpe05g00866 . Bhi08g00311 . . . . . . Cla02g01367 Cam02g1446 Cec02g1466 Cco02g1504 Clacu02g1426 Cmu02g1382 Cre02g1708 . . Cone18ag0297 . Lsi02g01441 . . Cme11g01769 . . Bda07g00619 Bda09g00178 . Bpe11g00799 . . . Cmo02g00870 . Cma02g00871 . Car02g00632 . . . . . . . . . . Cla03g00228 Cam03g0241 Cec03g0237 Cco03g0246 Clacu03g0241 Cmu03g0856 Cre03g0548 . Csa01g01305 . Cme12g00332
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g1551 . 1 218 AS2 family AT1G65620 66.8 8.7e-70 260.4
Cre02g1647 . 2 110 AS2 family AT1G65620 79.8 2.3e-46 182.6
Cre06g2588 . 59 234 AS2 family AT1G65620 54.0 2.3e-46 182.6
Cre10g1536 . 18 128 AS2 family AT1G65620 70.3 2.4e-43 172.6
Cre01g0532 . 1 117 AS2 family AT1G65620 69.2 1.2e-42 170.2
Cre01g1243 . 1 116 AS2 family AT1G65620 69.0 9.3e-40 160.6
Cre02g1647 . 1 122 AS2 family AT5G66870 85.2 3.8e-56 215.7
Cre11g1551 . 4 112 AS2 family AT5G66870 77.1 9.8e-44 174.5
Cre01g1243 . 12 129 AS2 family AT5G66870 65.3 1.9e-39 160.2
Cre06g2588 . 57 169 AS2 family AT5G66870 68.1 2.5e-39 159.8
Cre10g1536 . 22 128 AS2 family AT5G66870 68.2 3.3e-39 159.5
Cre01g0532 . 1 121 AS2 family AT5G66870 62.8 7.3e-39 158.3
Cre02g1647 . 4 118 AS2 family AT2G23660 68.7 9.7e-44 174.5
Cre11g1551 . 6 112 AS2 family AT2G23660 69.2 8.5e-40 161.4
Cre06g2588 . 64 169 AS2 family AT2G23660 64.2 2.1e-38 156.8
Cre01g1243 . 12 137 AS2 family AT2G23660 61.1 2.3e-37 153.3
Cre10g1536 . 22 138 AS2 family AT2G23660 58.1 2.3e-37 153.3
Cre01g0532 . 4 127 AS2 family AT3G27650 79.4 7.0e-54 207.2
Cre10g1536 . 19 129 AS2 family AT3G27650 84.7 2.2e-52 202.2
Cre06g2588 . 60 170 AS2 family AT3G27650 78.4 2.2e-47 185.7
Cre01g1243 . 12 117 AS2 family AT3G27650 74.5 1.6e-42 169.5
Cre11g1551 . 3 112 AS2 family AT3G27650 68.2 8.0e-42 167.2
Cre02g1647 . 4 112 AS2 family AT3G27650 66.1 1.1e-38 156.8
Cre06g2588 . 59 169 AS2 family AT5G63090 93.7 4.6e-57 218.0
Cre10g1536 . 17 140 AS2 family AT5G63090 77.4 1.7e-51 199.5
Cre01g0532 . 1 113 AS2 family AT5G63090 86.0 1.4e-50 196.4
Cre01g1243 . 10 116 AS2 family AT5G63090 82.2 2.3e-48 189.1
Cre11g1551 . 3 122 AS2 family AT5G63090 70.8 1.8e-45 179.5
Cre02g1647 . 2 110 AS2 family AT5G63090 68.8 3.3e-39 158.7
Cre09g1636 . 15 126 AS2 family AT5G63090 64.3 3.7e-38 155.2
Cre02g2163 . 14 117 AS2 family AT5G63090 67.3 1.4e-37 153.3
Cre07g0805 . 4 106 AS2 family AT5G63090 69.9 1.4e-37 153.3
Cre07g0805 . 3 114 AS2 family AT2G30130 92.0 2.9e-54 208.8
Cre02g2240 . 2 137 AS2 family AT2G30130 69.5 1.3e-49 193.4
Cre09g1636 . 10 130 AS2 family AT2G30130 68.6 1.4e-45 179.9
Cre02g2163 . 10 125 AS2 family AT2G30130 72.4 9.3e-45 177.2
Cre01g0226 . 21 122 AS2 family AT2G30130 73.5 6.9e-40 161.0
Cre06g2588 . 64 167 AS2 family AT2G30130 68.3 1.4e-37 153.3
Cre07g0881 . 48 150 AS2 family AT2G30130 69.9 1.4e-37 153.3
Cre10g1536 . 23 135 AS2 family AT2G30130 61.9 9.4e-37 150.6
Cre11g1551 . 7 109 AS2 family AT2G30130 67.0 9.4e-37 150.6
Cre09g1636 . 4 171 AS2 family AT1G31320 74.7 1.0e-66 250.0
Cre02g2163 . 1 171 AS2 family AT1G31320 72.3 8.3e-61 230.3
Cre07g0805 . 2 132 AS2 family AT1G31320 66.2 3.2e-44 175.3
Cre01g0226 . 21 127 AS2 family AT1G31320 72.9 2.3e-42 169.1
Cre02g2240 . 6 122 AS2 family AT1G31320 66.7 1.5e-41 166.4
Cre07g0881 . 48 160 AS2 family AT1G31320 62.8 1.3e-37 153.3
Cre06g2588 . 65 176 AS2 family AT1G31320 62.5 8.4e-37 150.6
Cre03g0550 . 34 202 AS2 family AT2G28500 55.2 6.0e-46 181.4
Cre03g0548 . 10 128 AS2 family AT2G28500 70.6 3.9e-45 178.7
Cre02g2394 . 31 196 AS2 family AT2G28500 53.8 4.7e-43 171.8
Cre02g1708 . 27 118 AS2 family AT2G28500 89.1 1.4e-42 170.2
Cre02g2163 . 13 122 AS2 family AT2G28500 66.4 6.6e-37 151.4
Cre07g0805 . 5 115 AS2 family AT2G28500 64.9 6.6e-37 151.4
Cre02g2394 . 4 196 AS2 family AT1G07900 60.9 5.4e-45 177.9
Cre02g1708 . 27 181 AS2 family AT1G07900 69.4 2.7e-44 175.6
Cre03g0550 . 28 202 AS2 family AT1G07900 56.8 4.6e-44 174.9
Cre03g0548 . 10 128 AS2 family AT1G07900 67.2 1.2e-41 166.8
Cre02g2163 . 6 171 AS2 family AT1G16530 57.1 2.5e-46 182.2
Cre09g1636 . 4 171 AS2 family AT1G16530 52.7 4.1e-41 164.9
Cre02g2240 . 2 161 AS2 family AT1G16530 51.8 8.6e-39 157.1
Cre07g0805 . 5 110 AS2 family AT1G16530 68.2 2.8e-37 152.1
Cre01g0226 . 21 156 AS2 family AT1G16530 54.1 4.7e-37 151.4
Cre07g0881 . 1 157 AS2 family AT2G30340 69.6 6.0e-58 221.5
Cre11g1062 . 13 157 AS2 family AT2G30340 68.9 5.8e-53 204.9
Cre07g0881 . 32 157 AS2 family AT2G40470 87.3 6.9e-59 224.2
Cre11g1062 . 30 154 AS2 family AT2G40470 77.6 6.9e-51 197.6
Cre02g2163 . 11 122 AS2 family AT2G40470 65.2 2.5e-40 162.5
Cre09g1636 . 16 126 AS2 family AT2G40470 64.0 3.9e-38 155.2
Cre11g1088 . 1 167 AS2 family AT3G11090 60.4 7.7e-48 187.2
Cre07g0456 . 1 113 AS2 family AT2G42440 74.3 4.5e-44 175.3
Cre09g0763 . 9 118 AS2 family AT2G42440 71.8 3.6e-41 165.6
Cre07g0455 . 31 138 AS2 family AT2G42440 70.4 4.3e-39 158.7
Cre06g0810 . 29 138 AS2 family AT2G42440 65.2 3.1e-37 152.5
Cre09g0763 . 6 126 AS2 family AT3G58190 74.8 3.0e-47 185.7
Cre07g0456 . 4 115 AS2 family AT3G58190 79.5 8.6e-47 184.1
Cre07g0455 . 31 138 AS2 family AT3G58190 71.3 1.4e-41 166.8
Cre06g0810 . 29 127 AS2 family AT3G58190 74.7 6.0e-40 161.4
Cre07g0456 . 1 171 AS2 family AT2G31310 51.6 6.8e-40 161.0
Cre07g0455 . 31 241 AS2 family AT2G42430 55.2 1.1e-55 213.8
Cre06g0810 . 29 131 AS2 family AT2G42430 74.8 1.0e-40 164.1
Cre07g0456 . 3 94 AS2 family AT2G42430 80.4 7.4e-39 157.9
Cre09g0763 . 12 114 AS2 family AT2G42430 70.9 8.2e-38 154.5
Cre05g0303 . 16 120 AS2 family AT2G42430 66.7 1.8e-37 153.3
Cre06g0810 . 29 222 AS2 family AT4G00220 62.4 2.7e-59 225.7
Cre05g0303 . 18 181 AS2 family AT4G00220 53.3 4.6e-43 171.8
Cre06g0811 . 25 111 AS2 family AT4G00220 79.3 6.5e-37 151.4
Cre06g0810 . 29 240 AS2 family AT2G45420 68.1 2.1e-71 266.2
Cre05g0303 . 18 127 AS2 family AT2G45420 78.2 2.2e-49 193.0
Cre07g0455 . 32 134 AS2 family AT2G45420 77.7 4.5e-42 168.7
Cre09g0763 . 12 118 AS2 family AT2G45420 70.1 2.5e-40 162.9
Cre10g1714 . 37 126 AS2 family AT2G45420 80.0 1.1e-37 154.1
Cre06g0811 . 25 111 AS2 family AT2G45420 80.5 5.7e-37 151.8
Cre07g0456 . 7 95 AS2 family AT2G45420 76.4 1.3e-36 150.6
Cre10g1714 . 28 150 AS2 family AT3G03760 78.0 3.5e-45 179.1
Cre06g0810 . 29 130 AS2 family AT3G03760 80.4 2.6e-40 162.9
Cre07g0455 . 31 133 AS2 family AT3G03760 74.8 7.0e-38 154.8
Cre06g0810 . 29 140 AS2 family AT4G00210 73.2 3.1e-44 175.6
Cre05g0303 . 16 132 AS2 family AT4G00210 64.1 9.3e-41 164.1
Cre09g0763 . 12 116 AS2 family AT4G00210 65.7 3.7e-37 152.1
Cre05g0303 . 15 137 AS2 family AT2G45410 63.7 5.6e-42 167.9
Cre07g0455 . 32 134 AS2 family AT2G45410 67.0 1.9e-37 152.9
Cre07g0702 . 12 154 AS2 family AT5G06080 60.3 7.3e-44 174.1
Cre09g0062 . 33 140 AS2 family AT3G13850 75.9 7.1e-43 171.4
Cre05g1345 . 1 166 AS2 family AT1G68510 62.5 1.4e-58 223.4
Cre06g2350 . 1 159 AS2 family AT1G68510 61.2 3.5e-54 208.8
Cre05g2445 . 1 171 AS2 family AT1G68510 58.9 4.7e-51 198.4
Cre04g1366 . 1 104 AS2 family AT1G68510 64.4 8.4e-40 161.0
Cre05g2235 . 1 121 AS2 family AT1G68510 59.3 1.0e-37 154.1
Cre05g1345 . 1 302 AS2 family AT1G67100 50.2 4.1e-71 265.0
Cre06g2350 . 1 140 AS2 family AT1G67100 72.5 1.5e-60 229.9
Cre05g2445 . 1 132 AS2 family AT1G67100 68.6 5.6e-52 201.4
Cre04g1366 . 1 110 AS2 family AT1G67100 67.3 1.9e-44 176.4
Cre05g2235 . 1 110 AS2 family AT1G67100 62.7 7.1e-39 157.9
Cre05g1345 . 1 302 AS2 family AT3G02550 54.9 1.3e-78 290.0
Cre06g2350 . 1 163 AS2 family AT3G02550 68.9 1.6e-63 240.0
Cre05g2445 . 1 141 AS2 family AT3G02550 63.4 2.1e-47 186.4
Cre04g1366 . 1 136 AS2 family AT3G02550 55.1 5.5e-40 161.8
Cre04g1366 . 1 235 AS2 family AT5G67420 58.8 9.8e-71 263.8
Cre05g2235 . 1 117 AS2 family AT5G67420 70.1 1.7e-46 183.3
Cre05g1345 . 3 112 AS2 family AT5G67420 68.2 1.2e-44 177.2
Cre06g2350 . 3 112 AS2 family AT5G67420 61.8 2.4e-40 162.9
Cre05g2445 . 3 113 AS2 family AT5G67420 62.5 4.4e-39 158.7
Cre04g1366 . 1 234 AS2 family AT3G49940 60.5 5.7e-71 264.6
Cre05g1345 . 3 157 AS2 family AT3G49940 53.5 5.4e-45 178.3
Cre06g2350 . 3 112 AS2 family AT3G49940 62.7 1.8e-40 163.3
Cre05g2445 . 3 113 AS2 family AT3G49940 62.5 8.3e-38 154.5
Cre04g1366 . 1 235 AS2 family AT4G37540 57.1 9.8e-68 253.8
Cre05g1345 . 3 113 AS2 family AT4G37540 65.8 9.2e-42 167.5
Cre06g2350 . 3 113 AS2 family AT4G37540 63.1 5.0e-40 161.8
Cre05g2445 . 3 126 AS2 family AT4G37540 56.5 1.8e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010788 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53179 PF03195 LOB 1.50E-40 No_clan Cre TF