Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1732 ATGTCAAATTCCGATCATACCACCAACGCCAATGGCGTCTCCAATGCCGCCGCCATCGAAACCCACAAGAATCAGCCCTCTTCTAACGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCTACTGGTACTGGTACCACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAACGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATTCTCGGCAAGCGCGTTAGGTCTGACGATGACGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGACCTGATTACGGGCAGGTTTGGAGTTTTGCCGCCGCCACTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGAGGTTCTGGACGGCGGGAAGATGACCCTCGCTAA 774 56.59 MSNSDHTTNANGVSNAAAIETHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAATPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGSGRREDDPR 257
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 30553321 30554094 + CrPI670011_02g017320.1 Cre02g1732 491013
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1732 257 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
Cre02g1732 257 MobiDBLite consensus disorder prediction 20 51 - -
Cre02g1732 257 MobiDBLite consensus disorder prediction 36 51 - -
Cre02g1732 257 Pfam TCP family transcription factor 39 121 IPR017887 -
Cre02g1732 257 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 153 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Cre02g1732 257 MobiDBLite consensus disorder prediction 112 136 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1732 Cre-Chr2:30553321 Cre09g1714 Cre-Chr9:35311297 2.90E-78 dispersed
Cre02g1732 Cre-Chr2:30553321 Cre01g1570 Cre-Chr1:28832522 5.60E-29 transposed
Cre02g1732 Cre-Chr2:30553321 Cre06g2493 Cre-Chr6:32663957 5.60E-29 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53180 PF03634 TCP 3.40E-33 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1732 K16221 - csv:101206050 417.157