Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1767 ATGTTTGACTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAATATAGATGGATTTAACCGTGCAGTCCATGGGAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCTGAAGGACTTAAATCGATTGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTCGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCAGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTTGAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGAACAGCTTATATTGCACCATCATCTCGGGTGTTTGGAAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGGTACTTGCGGCGGTACTTCATCATTGACTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTGTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCATTGGCTTCAGAGTTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTAATGCCCCTATTTGCAGGAAAGATTTCTTGTATTGTGGTAACCAAGACATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTTGATGGCCTTAAGTCAAGTTGCGCACCTACTGATGGAAATGAACAGTTCGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCTTCCAAGAATTTTATCGCTAAATACTGTTACTGTCTGTGGTGGGGACTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTACCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGATTGCTGCCGCAGGATCTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAAACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAACGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTTCACTTACATAGTGCGTGAGGGTGATCCAGTTGATGAGATGCTTTTCATTATCCGTGGTCGGCTTGAGAGTGTGACTACAGATGGCGGGCGGAGTGGATTTTTCAACCGTTCCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTTTGGATCCGAAATCTGGTTCGAATCTTCCATCTTCTACAAGGACGGTGAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCACAGCAATGGAGGACCTGGGCTGCCTGCTTCATCCAAGCGGCATGGCGCCGATATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGATCTCATACTGCCACAAGTGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGGGTTCAGCGATACCGGAATGCAAAGAGCGCTCAGGAATTAATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA 2205 43.81 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQSLNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLVIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCNAPICRKDFLYCGNQDMEGYATWNQTGVDGLKSSCAPTDGNEQFDFGIFQQALSSGIAASKNFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEFTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSHTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30984171 30997053 + CrPI670011_02g017670.1 Cre02g1767 491048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1767 734 Pfam Ion transport protein 112 431 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre02g1767 734 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Cre02g1767 734 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Cre02g1767 734 Gene3D Helix hairpin bin 433 496 - -
Cre02g1767 734 Pfam Cyclic nucleotide-binding domain 530 615 IPR000595 -
Cre02g1767 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 83 722 - -
Cre02g1767 734 Gene3D Jelly Rolls 503 623 IPR014710 -
Cre02g1767 734 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre02g1767 734 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre02g1767 734 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre02g1767 734 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre02g1767 734 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre02g1767 734 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre02g1767 734 SMART cnmp_10 505 636 IPR000595 -
Cre02g1767 734 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Cre02g1767 734 Gene3D - 110 430 - -
Cre02g1767 734 ProSiteProfiles IQ motif profile. 641 670 - -
Cre02g1767 734 CDD CAP_ED 505 636 IPR000595 -
Cre02g1767 734 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Cre02g1767 734 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1767 Cre-Chr2:30984171 Cre09g2458 Cre-Chr9:43895116 3.00E-208 dispersed
Cre02g1767 Cre-Chr2:30984171 Cre10g1605 Cre-Chr10:30159402 4.30E-300 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1767 K05391 - csv:101219180 1379.77