Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g1767 | ATGTTTGACTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAATATAGATGGATTTAACCGTGCAGTCCATGGGAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCTGAAGGACTTAAATCGATTGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTCGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCAGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTTGAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGAACAGCTTATATTGCACCATCATCTCGGGTGTTTGGAAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGGTACTTGCGGCGGTACTTCATCATTGACTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTGTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCATTGGCTTCAGAGTTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTAATGCCCCTATTTGCAGGAAAGATTTCTTGTATTGTGGTAACCAAGACATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTTGATGGCCTTAAGTCAAGTTGCGCACCTACTGATGGAAATGAACAGTTCGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCTTCCAAGAATTTTATCGCTAAATACTGTTACTGTCTGTGGTGGGGACTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTACCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGATTGCTGCCGCAGGATCTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAAACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAACGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTTCACTTACATAGTGCGTGAGGGTGATCCAGTTGATGAGATGCTTTTCATTATCCGTGGTCGGCTTGAGAGTGTGACTACAGATGGCGGGCGGAGTGGATTTTTCAACCGTTCCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTTTGGATCCGAAATCTGGTTCGAATCTTCCATCTTCTACAAGGACGGTGAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCACAGCAATGGAGGACCTGGGCTGCCTGCTTCATCCAAGCGGCATGGCGCCGATATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGATCTCATACTGCCACAAGTGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGGGTTCAGCGATACCGGAATGCAAAGAGCGCTCAGGAATTAATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA | 2205 | 43.81 | MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQSLNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLVIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCNAPICRKDFLYCGNQDMEGYATWNQTGVDGLKSSCAPTDGNEQFDFGIFQQALSSGIAASKNFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEFTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSHTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD | 734 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 30984171 | 30997053 | + | CrPI670011_02g017670.1 | Cre02g1767 | 491048 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g1767 | 734 | Pfam | Ion transport protein | 112 | 431 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre02g1767 | 734 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 505 | 589 | IPR000595 | - | |
Cre02g1767 | 734 | SUPERFAMILY | Voltage-gated potassium channels | 101 | 427 | - | - | |
Cre02g1767 | 734 | Gene3D | Helix hairpin bin | 433 | 496 | - | - | |
Cre02g1767 | 734 | Pfam | Cyclic nucleotide-binding domain | 530 | 615 | IPR000595 | - | |
Cre02g1767 | 734 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 83 | 722 | - | - | |
Cre02g1767 | 734 | Gene3D | Jelly Rolls | 503 | 623 | IPR014710 | - | |
Cre02g1767 | 734 | PRINTS | EAG/ELK/ERG potassium channel family signature | 282 | 292 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cre02g1767 | 734 | PRINTS | EAG/ELK/ERG potassium channel family signature | 418 | 427 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cre02g1767 | 734 | PRINTS | EAG/ELK/ERG potassium channel family signature | 154 | 164 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cre02g1767 | 734 | PRINTS | EAG/ELK/ERG potassium channel family signature | 468 | 475 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cre02g1767 | 734 | PRINTS | EAG/ELK/ERG potassium channel family signature | 400 | 411 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cre02g1767 | 734 | PRINTS | EAG/ELK/ERG potassium channel family signature | 165 | 174 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Cre02g1767 | 734 | SMART | cnmp_10 | 505 | 636 | IPR000595 | - | |
Cre02g1767 | 734 | SUPERFAMILY | cAMP-binding domain-like | 434 | 625 | IPR018490 | - | |
Cre02g1767 | 734 | Gene3D | - | 110 | 430 | - | - | |
Cre02g1767 | 734 | ProSiteProfiles | IQ motif profile. | 641 | 670 | - | - | |
Cre02g1767 | 734 | CDD | CAP_ED | 505 | 636 | IPR000595 | - | |
Cre02g1767 | 734 | FunFam | Cyclic nucleotide-gated ion channel 1 | 503 | 621 | - | - | |
Cre02g1767 | 734 | FunFam | Cyclic nucleotide-gated ion channel 1 | 432 | 496 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1767 | Cre-Chr2:30984171 | Cre09g2458 | Cre-Chr9:43895116 | 3.00E-208 | dispersed | |
Cre02g1767 | Cre-Chr2:30984171 | Cre10g1605 | Cre-Chr10:30159402 | 4.30E-300 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g1767 | K05391 | - | csv:101219180 | 1379.77 |