Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1810 ATGGATGAGTTTTACAGGCTTAGCAACTCTGTTATAGCCTCATATTCTAATGGTGTTGTGGGAGGTGAAGCCATTGCAAGCACCAGCTGTGGAGGGATTCATGAAGCTTTAATGGTGGATAATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAGCTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCACCCTCCTAGGTCTTCTATTGAGTTGGGAACTGATCCCCAACTGGACAACTTCATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAGTGAGCTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGTGACGTCGGATTCTCGCTCAGCCATGAATGACGAAGTAGCCGGGACTCCGGAGGAAGAACCGAGCAGCTATGGGGAGGTGGAAATGCCGGGAAATCACGAGTCGTTCTGCACGCAAAAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAGGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCGAAACTATCTGTTGTTACTGGTCTAGACCAAAAGCAAATCAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCTGAAGATATGCGATTCGTGCTCATGGACGGGGCGGGGGCCGGGGCCGGGGAATGCATTAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAGGCCATGTAATTTGA 972 44.34 MDEFYRLSNSVIASYSNGVVGGEAIASTSCGGIHEALMVDNDMLQLEAEATTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPPRSSIELGTDPQLDNFMESYCEVLHQYKSELSKPFDEATMFLTNIELELSNLCKGSFTVTSDSRSAMNDEVAGTPEEEPSSYGEVEMPGNHESFCTQKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGAGAGAGECIKGSNFYDNGETGGHVI 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31433610 31436711 + CrPI670011_02g018100.1 Cre02g1810 491091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1810 323 SMART KNOX1_2 58 102 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre02g1810 323 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Cre02g1810 323 MobiDBLite consensus disorder prediction 166 196 - -
Cre02g1810 323 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre02g1810 323 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre02g1810 323 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Cre02g1810 323 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre02g1810 323 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Cre02g1810 323 CDD homeodomain 236 287 IPR001356 GO:0003677(InterPro)
Cre02g1810 323 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Cre02g1810 323 Gene3D - 222 293 - -
Cre02g1810 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 294 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre02g1810 323 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Cre02g1810 323 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre02g1810 323 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre02g1810 323 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1810 Cre-Chr2:31433610 Cre05g1932 Cre-Chr5:31489712 6.70E-64 dispersed
Cre02g1810 Cre-Chr2:31433610 Cre05g2714 Cre-Chr5:38032045 1.90E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53184 PF03791 KNOX2 4.20E-21 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1810 - - - 0.0