Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1813 ATGGAATTTGAAGAAGCCTCTCTCTTGCAAAAAGTCTGTGCTCTTTACAACCAAATCTCAAGCCTCGCTAGCCTCGAGCCTTCAAAAAATGTCGACACTCTTTTCACTCAACTAGTCCTCACGTGCTCTCCACCTGCCCCTGGCCTTGATATTGCCTCTTTGTCTCAGCCACTTCAAGCCATGAGGGCTCATCTCATTCGCCTTTGTGCTAAAGCTGAAGCTCTTCTTGAACTTCATTTCTCTTCCATTTTGGCTTCCTCTTTTGATAATCCCATTTCTAACTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTTTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTGTCGTCGTGTCCCCGCTACCATCGCGTTCCTTGGCTCTGGACCCCTCCCGCTCTCCTCCATTGTCATGGCGTCTATCCATCTTAAGGGAACTATTTTCCACAACTTTGACATTGATCCAGCTGCAAACACCATGGCTAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTCCACACAACAGATGTAATGGAAGTGACAAAGGGATTAAAAGATTATGAAGTAGTTTTCTTAGCAGCATTGGTAGGATTAGAAGAGGAAGAAAAAGGAAGAGTTCTAAGGCATTTGGGGAAACATATGGCAGCTGGTGCTTATTTGATGCTAAGAAGTGCACATGGAGCTAGAGCATTTTTATATCCTGTTGTTGATATTTGTAACGTTGAAGCTTCTGGATTTGAGATTTTATCTGTGTTCCATCCCACTGATGAAGTTATAAACTCTGTTGTTATTGCAAGGAAGAAACTAGTGTTTGATCGAAACTCGATCGAGGATGAGGATGACGACGAGGACGACGAGAAGCGAGGTATATTAGTTAATACCTCATCTATTGTGTTGCCTGAGAAATGCTCTGGGTTTAATGGCTTTAGTCCCATGATTGAAGAGCAACTTTCTTGA 981 42.3 MEFEEASLLQKVCALYNQISSLASLEPSKNVDTLFTQLVLTCSPPAPGLDIASLSQPLQAMRAHLIRLCAKAEALLELHFSSILASSFDNPISNLSIFPYYSNYLKLSLLEFDILRSHCRRVPATIAFLGSGPLPLSSIVMASIHLKGTIFHNFDIDPAANTMASQLVCSDPDLSQRMIFHTTDVMEVTKGLKDYEVVFLAALVGLEEEEKGRVLRHLGKHMAAGAYLMLRSAHGARAFLYPVVDICNVEASGFEILSVFHPTDEVINSVVIARKKLVFDRNSIEDEDDDEDDEKRGILVNTSSIVLPEKCSGFNGFSPMIEEQLS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31452405 31454067 - CrPI670011_02g018130.1 Cre02g1813 491094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1813 326 Pfam Nicotianamine synthase protein 5 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cre02g1813 326 Gene3D Vaccinia Virus protein VP39 9 276 IPR029063 -
Cre02g1813 326 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 280 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cre02g1813 326 PANTHER NICOTIANAMINE SYNTHASE 3 4 283 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1813 K05953 - - csv:101203651 546.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1813 Cre-Chr2:31452405 Cre06g2196 Cre-Chr6:29771962 1.10E-66 dispersed
Cre02g1813 Cre-Chr2:31452405 Cre02g1814 Cre-Chr2:31466648 5.90E-84 tandem
Cre02g1813 Cre-Chr2:31452405 Cre03g2034 Cre-Chr3:37358506 7.70E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g2034 . 1 317 Nicotianamine Synthase Gene Family AT1G09240 54.3 8.1e-94 340.9
Cre02g1813 . 1 275 Nicotianamine Synthase Gene Family AT1G09240 60.1 1.4e-93 340.1
Cre02g1814 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 58.8 5.1e-88 321.6
Cre06g2196 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 53.6 2.7e-73 272.7
Cre03g2034 . 3 294 Nicotianamine Synthase Gene Family AT1G56430 58.5 2.2e-99 359.4
Cre02g1813 . 4 326 Nicotianamine Synthase Gene Family AT1G56430 55.2 1.0e-96 350.5
Cre02g1814 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 59.6 6.1e-89 324.7
Cre06g2196 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 52.6 7.7e-76 281.2
Cre02g1813 . 1 275 Nicotianamine Synthase Gene Family AT5G04950 58.5 9.3e-90 327.4
Cre03g2034 . 1 273 Nicotianamine Synthase Gene Family AT5G04950 55.8 2.7e-89 325.9
Cre02g1814 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 57.0 6.0e-89 324.7
Cre02g1813 . 1 275 Nicotianamine Synthase Gene Family AT5G56080 58.7 2.2e-91 332.8
Cre03g2034 . 1 273 Nicotianamine Synthase Gene Family AT5G56080 56.7 2.1e-89 326.2
Cre02g1814 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 56.5 1.1e-87 320.5
Cre06g2196 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 51.3 3.7e-70 262.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125