Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1899 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTCTTTCGCCCTCCTCTCGACAATGATGATTCTCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGCATTCGCAAATCCAGAGTGTTTTCTAGGCATTCCCCTTCCTCCTCCGCTCTTCCTCCCATCCCTAAGGACACTGACCCTCCGATTCGATGGCGCAAAGGCGAATTGATTGGCTGTGGCGCCTTTGGTCGCGTTTATATGGGCATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTCAGGAGCTTGAGGAAGAAGTAAAACTTCTGAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGCACAGTCAGAGAGGATGATTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATATCGTCACTTCTGGGGAAATTTGGAGCCTTTCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGACAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACTTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAGCAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGCACAACGAAGTCTCATCCACCAATCCCTGAGCAGCTCTCGGTCGAAGCGAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCAACTGCCTCTGAACTTCTGAAGCATCCTTTTGTTACCGGGGAGGAGGCAGAATCTCAACTTGTGTCACGTGATGCATGCACGGAGCCCCTGGAAATCCATTCTCCTTTATATACTTCAGAACTTGAAATGAGTAAAACTCCCACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAAAGGTATACACCGCAAACAAACTAGAAAGTGATATATGGGGAGGAAATAGTGATGATGAAATGTGTCAGATTGATGACAAGGACGATTTTATGTTAGATGAAGTAAAAATCGACTCTTCTATTATACATGAGAACATGAAGAGTTATAACCCAATTTGCGAGCCCTCTGATGATGAGGATTGCAACTTTGATAGAAGTCCAATAGTAGACCAAGGAAGCAATTTACATGAGGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGTTCTCGATGAGGACCAAAACTTCTCCTTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGGATGAGAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTCTATGAGGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATCGAGAGTAAGCAAGATGAAAGTACTCCTAAATACTTGAAATTGCCCCCGAAAAGCCGGTCACCAAGTCGAAGTCCTGGTAATCCATCCCCAGCACTTGATGCTTTTGGCTCTGGTAGCCCAGGGAGTGGTAGCAGGGGTATTGTAAATGATCAAAGGTCACAACTCAACGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGCATTATTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGAGAAAACGAGAGATGATGCGTCAAGCTGGTGCGGGAGGCAAAACTTCATCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGGACAAGATTTGCATCTCCATTCCGGGATGATGCGTCGAGCGCTGGGAGGGAGAACAGGGAAAACTTCATCTCCTGA 2043 44.4 MQDIFASVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSALPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPTASELLKHPFVTGEEAESQLVSRDACTEPLEIHSPLYTSELEMSKTPTHPGSSDICNLDSLSCSKVYTANKLESDIWGGNSDDEMCQIDDKDDFMLDEVKIDSSIIHENMKSYNPICEPSDDEDCNFDRSPIVDQGSNLHEEALAPGSCSGVLDEDQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNASCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGSGSPGSGSRGIVNDQRSQLNDWKGLLVDGQSEAGSPSKHYSEIQRKWKEELDQELERKREMMRQAGAGGKTSSPKDKAMGRPRERTRFASPFRDDASSAGRENRENFIS 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32333377 32338332 - CrPI670011_02g018990.1 Cre02g1899 491180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1899 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g1899 680 Coils Coil 615 639 - -
Cre02g1899 680 MobiDBLite consensus disorder prediction 610 635 - -
Cre02g1899 680 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 46 336 IPR050538 -
Cre02g1899 680 FunFam Mitogen-activated protein kinase kinase kinase 2 69 361 - -
Cre02g1899 680 Coils Coil 103 130 - -
Cre02g1899 680 Gene3D Transferase(Phosphotransferase) domain 1 69 359 - -
Cre02g1899 680 FunFam Serine/threonine-protein kinase STE11 67 160 - -
Cre02g1899 680 MobiDBLite consensus disorder prediction 577 591 - -
Cre02g1899 680 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cre02g1899 680 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1899 680 SMART serkin_6 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1899 680 MobiDBLite consensus disorder prediction 540 680 - -
Cre02g1899 680 SUPERFAMILY Protein kinase-like (PK-like) 69 371 IPR011009 -
Cre02g1899 680 MobiDBLite consensus disorder prediction 647 680 - -
Cre02g1899 680 MobiDBLite consensus disorder prediction 45 64 - -
Cre02g1899 680 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1899 680 CDD STKc_MAPKKK 69 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1899 Cre-Chr2:32333377 Cre06g1346 Cre-Chr6:7538686 5.20E-207 dispersed
Cre06g1009 Cre-Chr6:3697846 Cre02g1899 Cre-Chr2:32333377 2.80E-07 transposed
Cre02g1899 Cre-Chr2:32333377 Cre05g0708 Cre-Chr5:6258340 1.20E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63878 PF00069 Pkinase 4.00E-72 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1899 K20606 - csv:101209358 1228.0