Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g1958 ATGGATGGACTCTCAGATCTTGAGCTTGATTGCTCTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACAATGAAATTTTGGGAAAAGGAGCTTCAAAAACAGTTTACAGAGCATTTGATGAATATGAAGGAATTGAGGTCGCTTGGAATCAAGTGAAACTTTATGATTTCTTGCAAAGTCCTGAAGATCTGGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCATAGAAATATAATGAAATTCTATACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACTCTCAGGCAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCGGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTGTAATCCATAGAGATCTCAAGTGTGACAATATCTTTGTTAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCAATCCTCAGGAAATCTCATGCTGATCATTGTGTGGGGACACCAGAGTTTATGGCTCCAGAAGTGTATGCAGAGGCATACAACGAATTAGTCGATATTTACTCATTTGGAATGTGCATTCTGGAGATGATAACTTTCGAATATCCATACAGCGAATGCACACATCCTGCTCAAATCTATAAGAAAGTCATATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGGCAATTCATTGATAAGTGTTTGGCATCGGTTTCATTTAGGCTCTCGGCAGCGGAGCTTTTGAATGACCCTTTTCTTCAAATTGATAATGGTGAATACGATCTAAGACCTGTCGATTACGGAAGAGGATTGGACGACGTTTGCCCTCTTATAAGACAACCTTATCTAGAACTTCGTAGAAGTGACAGCTCCTTTTGTAATGGATATCCATATGATTATAGTTTTGAAGCTTCAAGTGAGTCAGGTTATCATCCAATTGATAATGAAACCAATGGGATTGAACTTTTTGAGTATTGTGAAGGTGAACATTCTGAGGATGTTGATATTAGCATTAAAGGGAAGATGAGAGAAGATGGTGGCATCTTCTTAAGACTTAGAATTGCAGATAAAGAAGGGCGTATCAGGAACATTTATTTCCCATTTGATGTCGAGACAGATACAGCATTAAGTGTAGCAACAGAAATGGTTGCAGAGCTTGATATTACAGATCAAGACGTGACCAGAATTGCTGATATGATTGACGGAGAAATTGCTTCCTTGGTGCCTGAATGGAGGCCAGGTCCGGGAATTGAGGAAACGCCCCGCTTTGCAAATCAAAGCTATTGTCATAATTGTTCTACTACTACTTACAGCAATGCATCAAATGGTCTCTTGTTAAGAAATCCCGAGGGAAAGAACTCAGAGGTAGCTCAATGCTGTGGACATCGGTATGCTTCGATGCATGGGCGTTTTGAGGAGATAATGTACCAAGCTGACGAGTCTGAGCATCATACAGCAGAGGGTGCACCGAATGTGTCGAGCCATTCCGATTGCCTGAATTATCCTGAAATATGGGGACATCATGAAAGCCGTGAACTTAGTTCAATGAGCTCACGACAAAGCCATTCGGATGAAGATTACGAGAAAACAGATCAACCAGTTACAGTCATGGACACAAAAGAAATGATAATGGAAAGTAAAACTGCTCCTCATACGAGACGTACGCTTAGGAGCCTGATGAATTCCCTTTCTTTCTCAGAAACCGCTTCTCCTCCAGATATTAATGAGAATGATGTCCAACAAGAAATGAGATGGATTAAAGCCAAGTACCAAATAGAATTAAGCAAGCTCAGAGATCAACAGTTAAATCTTTCTTCAAAATCTTCAAGTTTTGAAGACGGGCAACAAAAAATGGAAAATGGGACTCTTCAAGGCAACCACAACCAAATCCTTGACAGGTCTGTTCAAGACACGAACCGAAGTAGTACTGGTAGCCATGTTTATATCGATAATAGCTGTTACAGTATAGACGCGCACAACCAAAGGGCTCGAAATCGCAAGGCTGTGGAGTCCCCTATTGTGGAGAAAGTTGCCACTGCCAAAAATGCCTGCACTGGTTCATTGCTTCCAAGCTCCCTTCATAGAACAATCTCTCTCCCAGTTGATGCTGTTCATATATAA 2205 40.82 MDGLSDLELDCSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFIDKCLASVSFRLSAAELLNDPFLQIDNGEYDLRPVDYGRGLDDVCPLIRQPYLELRRSDSSFCNGYPYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMREDGGIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFANQSYCHNCSTTTYSNASNGLLLRNPEGKNSEVAQCCGHRYASMHGRFEEIMYQADESEHHTAEGAPNVSSHSDCLNYPEIWGHHESRELSSMSSRQSHSDEDYEKTDQPVTVMDTKEMIMESKTAPHTRRTLRSLMNSLSFSETASPPDINENDVQQEMRWIKAKYQIELSKLRDQQLNLSSKSSSFEDGQQKMENGTLQGNHNQILDRSVQDTNRSSTGSHVYIDNSCYSIDAHNQRARNRKAVESPIVEKVATAKNACTGSLLPSSLHRTISLPVDAVHI 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32971515 32974886 - CrPI670011_02g019580.1 Cre02g1958 491239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g1958 734 FunFam probable serine/threonine-protein kinase WNK9 374 458 - -
Cre02g1958 734 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Cre02g1958 734 Gene3D - 374 441 - -
Cre02g1958 734 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 432 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cre02g1958 734 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1958 734 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1958 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 630 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cre02g1958 734 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Cre02g1958 734 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
Cre02g1958 734 CDD STKc_WNK 22 281 - -
Cre02g1958 734 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Cre02g1958 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g1958 734 MobiDBLite consensus disorder prediction 539 559 - -
Cre02g1958 734 SMART serkin_6 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g1958 734 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1958 Cre-Chr2:32971515 Cre03g0610 Cre-Chr3:5021396 1.70E-139 dispersed
Cre02g1271 Cre-Chr2:13970041 Cre02g1958 Cre-Chr2:32971515 1.20E-93 transposed
Cre05g0133 Cre-Chr5:1469645 Cre02g1958 Cre-Chr2:32971515 2.10E-127 transposed
Cre06g1728 Cre-Chr6:15233650 Cre02g1958 Cre-Chr2:32971515 1.60E-204 transposed
Cre09g2350 Cre-Chr9:42767772 Cre02g1958 Cre-Chr2:32971515 1.70E-127 transposed
Cre10g0688 Cre-Chr10:6547289 Cre02g1958 Cre-Chr2:32971515 2.90E-101 transposed
Cre02g1958 Cre-Chr2:32971515 Cre06g1368 Cre-Chr6:7881587 8.30E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63881 PF00069 Pkinase 1.80E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g1958 K08867 - csv:101219552 1363.59