Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre02g1971 | ATGGCATTGAGGTCTACAAAAAATGATGACATAGTTGAAGCGAAAACTCACCGGCGTCGGTGGAGAATGGCCTTCGCGGCTATTTATTTCACCAGACTCCTCATTTCTCTATCGAAAAAAGTCGGCGACCGCAAGTTCTTGCCATCGCCTTCATATGTTACTATTCATATGCACCTCAATGATGATGCTGATGTTGACAGTATGGATTCCGACGAGCGTTCGTTCGTCGATCGAAAAGTTTTGAGCATGATGGTGAGGGAGAAGAATTTCGAGTGTTTGGATCGTTTTGGAGGTGTTGAAGGACTCACTAATCTTCTCGAAACAAACTCCGAGAACGGAATCAACGCAACCAAAGATGATCTAATTTCTAGAAAAAATACTTTCGGGACAAATACTTATTTGAAGCTCCACGGTAGAAGCTTCATGAGTTTTGTGACCGAAGCGTTTAACGATACGACGATGATTATTCTTTTGATATGTGCAGCGCTTTCCTTGGGATTTGGTATAAAACAACATGGTTGGGACGATGGATGGTACGACGGCGGCAGCATTGTCATCGCCATATTTCTTGTGGTTGTCGTTTCCGCCGTTAGCAACTTCAAGCAATCGAGGCAGTTTGAGAAGCTTTCAAATGAGAGAGACGACATAAAAATGGAGGTCACTAGAGCCAGTCGACGCAAACTTGTGTCGATATTTGACATCGTCGTTGGAGACATTGTGTATTTGAAGATCGGAGATCAGATTCCTGCCGACGGAGTGTTCCTCGAAGGACATTCGCTGAAAGTCGACGAGTCTCACATGACTGGAGAGAGTGATCATGTTGAAGTAAATCATGGAAGTAATCCATTTTTGCTATCAGGAACCAAAGTGAGTGATGGTTTTGGTGTGATGATGGTTACTTCAGTGGGAATGAACACATCCTGGGGAGAAATGATGAGTTCAATCAGGCAGGAAGTTAATGAAGTTACTCCTTTGCAAGCTCGTTTAAACAAGATGACCATGGTGATTGGGAAGCTGGGGCTGACAGTCGCCGTGCTCGTACTTCTTGTTCTTCTTATTCGCTATTTCACCAGGAGCACCGGCGAGTTCAATGGAAGCAAGACGAGGTTCAATGATATCACGAATGCAGTTCTTGACATGGTTACGACTGCGGTTACGATCGTGGTCGTAGCAATACCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCCATGAAAAAGATGATGGCAGATAATGCAATGGTTCGGAAACTCTCTGCTTGTGAGACAATGGGCTCAGCAACAACAATTTGTACAGATAAAACTGGCACCCTTACTTTGAATGAGATGAAAGTTATAGAGTTTTGGATTGGGGAAGATGAAATTATTGACAAAAATGTTTCCAATTCAAGGATTGTGACTGAGGTTGTTGAATTGCTGCACCAAGCAGTTGGCTTGAATACAACTGGTAGTGTTCAAAGATCATCTTCTTCATTACCTCTAGAAATATTCGGGAGTCCGACTGAGAAAGCGATACTTTCTTGGGGCGTATTCAACTTGGATTTGAACCTACATGAATTGAAGAAGCAACATGAAATAATCCAAGTGGAGACTTTCAGTTCAGAGAAAAAGAGAAGCGGAGTTTTGGCAAGACGATACGGCGACAAGTTTATCCATACACATTGGAAGGGAGCAGCAGAGATGATATTGACAATGTGCTCATATTATTACAATAAACAAGGAACAGTTAGAGCCATTGATGACGAAGCAAGAAGACGATGGATTGCGACAATCACAACTATGGCAGGTAAAAGTCTCCGATGCATCGCCTTCGCCCACAAACTGAATGAACACAGCGAAAATGCAGAAGTTCCAACGAAACTCGACGAATCAGGATTGACATTACTCGGAATAGTCGGTTTGAAGGATCCTTGCAGGCCAGGAGTTAGAGAAGCTATAGAATCATGTAAAGCTGCAGGAGTGAACATCAAAATGGTAACAGGTGATAACTTACACACAGCAACAGCCATAGCAATCGAATGTGGAATACTAAATCCCGATGACAATACGAACAGTGACGAAGTTGTAGTCGAGGGCGTAAGATTTAGAAACTACACACCTGAGGAGAGAGTAGAAAAGATTGGGAACATCAAAGTAATGGCTAGATCTTCCCCATTTGACAAGCTTCTTATGGTACAATGCTTGAAGAATTTAGGCCATGTAGTGGCAGTCACAGGGGATGGAACAAATGATGCCCCTGCTCTTCATGAGGCAGACATTGGTCTTTCCATGGGGATTCAAGGAACTGAAGTGGCAAAGGAGAGTTCGGATATCGTCATCTTAGACGACAACTTTACATCAGTCGTCACGGTTTTGAAATGGGGAAGATGTGTTTACAACAACATCCAAAAGTTCATTCAATTTCAGCTCACAGTGAATATTGCAGCATTGGTAGTGAACTTCATTGCTGCTTTGTCTTCTGGCAAAGTCCCTTTAGCAGCAGTTCAACTATTATGGGTGAATCTCATAATGGATACCATGGGAGCTTTAGCCTTAGCCACTGAGCTACCCACCAATGATCTCATGGCGAAAACACCTGTCGGTCGAACCGAACCGTTGGTGACGAAAGTCATGTGGAGGAACCTCATTGCACAGGCTGTGTATCAAGTGACAGTCTTGTTGGTTTTGGAATTTAAAGGAAGTGTCATCTTGAATGTAAATGGAAAGGTAAAGAACACACTCATTTTCAATACTTTTGTGCTATGCCAAATCTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATATATTTGCAGGGATGCATAAAAGCAAGCTGTTTTTGGGAATAGTTGTGATAACTTTGGGTTTTCAAGTGGTAATGGTGGAGCTTTTGGGAAGGTTTGCAAATACTGAGAAGTTGAATTGGGGCCAATGGGGAGTATGTATTGGCATTGCAGCTTTGTCTTGGCCAATTGGATGGCTTTCCAAGTTAATACCAGTTTCTGCCCTTCACTTTCCAAGGAGAACAAATTCAGCACCATAA | 3036 | 42.72 | MALRSTKNDDIVEAKTHRRRWRMAFAAIYFTRLLISLSKKVGDRKFLPSPSYVTIHMHLNDDADVDSMDSDERSFVDRKVLSMMVREKNFECLDRFGGVEGLTNLLETNSENGINATKDDLISRKNTFGTNTYLKLHGRSFMSFVTEAFNDTTMIILLICAALSLGFGIKQHGWDDGWYDGGSIVIAIFLVVVVSAVSNFKQSRQFEKLSNERDDIKMEVTRASRRKLVSIFDIVVGDIVYLKIGDQIPADGVFLEGHSLKVDESHMTGESDHVEVNHGSNPFLLSGTKVSDGFGVMMVTSVGMNTSWGEMMSSIRQEVNEVTPLQARLNKMTMVIGKLGLTVAVLVLLVLLIRYFTRSTGEFNGSKTRFNDITNAVLDMVTTAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVIEFWIGEDEIIDKNVSNSRIVTEVVELLHQAVGLNTTGSVQRSSSSLPLEIFGSPTEKAILSWGVFNLDLNLHELKKQHEIIQVETFSSEKKRSGVLARRYGDKFIHTHWKGAAEMILTMCSYYYNKQGTVRAIDDEARRRWIATITTMAGKSLRCIAFAHKLNEHSENAEVPTKLDESGLTLLGIVGLKDPCRPGVREAIESCKAAGVNIKMVTGDNLHTATAIAIECGILNPDDNTNSDEVVVEGVRFRNYTPEERVEKIGNIKVMARSSPFDKLLMVQCLKNLGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNIAALVVNFIAALSSGKVPLAAVQLLWVNLIMDTMGALALATELPTNDLMAKTPVGRTEPLVTKVMWRNLIAQAVYQVTVLLVLEFKGSVILNVNGKVKNTLIFNTFVLCQIFNEFNARKMEKKNIFAGMHKSKLFLGIVVITLGFQVVMVELLGRFANTEKLNWGQWGVCIGIAALSWPIGWLSKLIPVSALHFPRRTNSAP | 1011 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 33129164 | 33132199 | - | CrPI670011_02g019710.1 | Cre02g1971 | 491252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre02g1971 | 1011 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 82 | 998 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cre02g1971 | 1011 | SUPERFAMILY | Calcium ATPase, transduction domain A | 218 | 314 | IPR008250 | - | |
| Cre02g1971 | 1011 | Gene3D | - | 147 | 993 | - | - | |
| Cre02g1971 | 1011 | SFLD | Haloacid Dehalogenase | 416 | 794 | - | - | |
| Cre02g1971 | 1011 | PANTHER | CATION TRANSPORTING ATPASE | 74 | 999 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cre02g1971 | 1011 | PRINTS | P-type cation-transporting ATPase superfamily signature | 434 | 448 | - | - | |
| Cre02g1971 | 1011 | PRINTS | P-type cation-transporting ATPase superfamily signature | 741 | 760 | - | - | |
| Cre02g1971 | 1011 | PRINTS | P-type cation-transporting ATPase superfamily signature | 633 | 644 | - | - | |
| Cre02g1971 | 1011 | PRINTS | P-type cation-transporting ATPase superfamily signature | 655 | 665 | - | - | |
| Cre02g1971 | 1011 | PRINTS | P-type cation-transporting ATPase superfamily signature | 263 | 277 | - | - | |
| Cre02g1971 | 1011 | PRINTS | P-type cation-transporting ATPase superfamily signature | 765 | 777 | - | - | |
| Cre02g1971 | 1011 | Gene3D | - | 431 | 786 | IPR023214 | - | |
| Cre02g1971 | 1011 | PRINTS | H+-transporting ATPase (proton pump) signature | 741 | 757 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre02g1971 | 1011 | PRINTS | H+-transporting ATPase (proton pump) signature | 773 | 798 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre02g1971 | 1011 | PRINTS | H+-transporting ATPase (proton pump) signature | 590 | 608 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre02g1971 | 1011 | Coils | Coil | 206 | 226 | - | - | |
| Cre02g1971 | 1011 | Gene3D | - | 444 | 640 | IPR023299 | GO:0000166(InterPro) | |
| Cre02g1971 | 1011 | Pfam | Cation transporting ATPase, C-terminus | 826 | 996 | IPR006068 | - | |
| Cre02g1971 | 1011 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 436 | 442 | IPR018303 | - | |
| Cre02g1971 | 1011 | Pfam | Cation transporter/ATPase, N-terminus | 97 | 164 | IPR004014 | - | |
| Cre02g1971 | 1011 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 440 | 645 | IPR023299 | GO:0000166(InterPro) | |
| Cre02g1971 | 1011 | FunFam | Calcium-transporting ATPase | 635 | 786 | - | - | |
| Cre02g1971 | 1011 | Pfam | haloacid dehalogenase-like hydrolase | 432 | 755 | - | - | |
| Cre02g1971 | 1011 | FunFam | Calcium-transporting ATPase | 758 | 1000 | - | - | |
| Cre02g1971 | 1011 | Pfam | E1-E2 ATPase | 217 | 412 | - | - | |
| Cre02g1971 | 1011 | FunFam | Calcium-transporting ATPase | 193 | 316 | - | - | |
| Cre02g1971 | 1011 | SUPERFAMILY | HAD-like | 432 | 845 | IPR036412 | - | |
| Cre02g1971 | 1011 | Gene3D | - | 119 | 316 | - | - | |
| Cre02g1971 | 1011 | NCBIfam | HAD-IC family P-type ATPase | 707 | 822 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre02g1971 | 1011 | NCBIfam | HAD-IC family P-type ATPase | 378 | 470 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre02g1971 | 1011 | SFLD | p-type atpase | 416 | 794 | IPR044492 | - | |
| Cre02g1971 | 1011 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 97 | 999 | IPR023298 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g0614 | Cre-Chr2:3107079 | Cre02g1971 | Cre-Chr2:33129164 | 5.90E-103 | dispersed | |
| Cre02g0615 | Cre-Chr2:3113460 | Cre02g1971 | Cre-Chr2:33129164 | 2.70E-108 | dispersed | |
| Cre02g1971 | Cre-Chr2:33129164 | Cre11g1583 | Cre-Chr11:25790856 | 2.40E-285 | dispersed | |
| Cre02g1971 | Cre-Chr2:33129164 | Cre09g0700 | Cre-Chr9:6774237 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre02g1971 | K01537 | - | csv:101218531 | 1744.94 |