Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2008 ATGATGGCGAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCGGGAGTTGATCATACATCGACCAGCTCCTCCACCATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGTGGACCCGTTAACAGCGGTGGTGTCGATGACGATGACGATAGAGATAACGGTGGCGATGAACCTAAAGAAGGAGCTATCGAAGTTCCAACGCGTCGTCCTCGTGGCCGTCCACCGGGCTCCAAGAATAAGCCTAAGCCTCCTATCTTCGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATCGCGGAAAGCGTTGCTCAATTCGCTCGACGGCGACAGAGAGGTGTTTCTGTGCTTAGTGGCAGCGGTACGGTAACGAATGTCACACTCCGGCAACCATCTGCGCCCGGTGCAGTCTTAACCCTTCACGGCCGGTTCGAGATTCTTTCTTTGACTGGAACTTTCCTCCCCGGACCAGCCCCGCCCGGGTCAACTGGACTAACAATCTACTTGGCCGGTGGACAAGGGCAGGTGGTGGGTGGCAGCGTAGTCGGGCCACTCACCGCTGCCGGCCCAGTGATGGTGATCGCTGCAACGTTTTCCAACGCGACATACGAAAGATTACCTTTGGAAGAGGAAGAAGAAGGCGGCGGAGTAGGAGCACAAGGGCACACATCAGCAGGCGGTGGTGCAGGCGACGGTTCGCCACAAGGCATCGGAGGCGGAGGCGGAGTCGGAGATCCGTCAGCTATGCCTCCGCTGTACAATTTACCGCCGAACTTGCTACCGAATGGCGGCGGCGGGCAGATGAATCAGGAGGCTTATTCGTGGGCTCACGGCGGCCGGCCGTCGTTTTAA 888 56.76 MMANRWWTSGQMGLPGVDHTSTSSSTMRKPDLGISMNDNGGPVNSGGVDDDDDRDNGGDEPKEGAIEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGAGDGSPQGIGGGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33535797 33536861 + CrPI670011_02g020080.1 Cre02g2008 491289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2008 295 PIRSF ESCAROLA 12 295 IPR014476 GO:0003680(InterPro)
Cre02g2008 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 293 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre02g2008 295 MobiDBLite consensus disorder prediction 1 95 - -
Cre02g2008 295 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Cre02g2008 295 MobiDBLite consensus disorder prediction 14 42 - -
Cre02g2008 295 Gene3D - 99 225 - -
Cre02g2008 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cre02g2008 295 CDD DUF296 99 182 IPR005175 -
Cre02g2008 295 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cre02g2008 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 211 IPR005175 -
Cre02g2008 295 MobiDBLite consensus disorder prediction 221 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2008 Cre-Chr2:33535797 Cre07g0703 Cre-Chr7:4944381 1.20E-70 dispersed
Cre02g2008 Cre-Chr2:33535797 Cre02g2010 Cre-Chr2:33570418 4.20E-20 proximal
Cre06g2308 Cre-Chr6:31037335 Cre02g2008 Cre-Chr2:33535797 3.90E-60 transposed
Cre02g0655 Cre-Chr2:3479554 Cre02g2008 Cre-Chr2:33535797 1.60E-58 transposed
Cre02g2008 Cre-Chr2:33535797 Cre05g0548 Cre-Chr5:4844801 1.70E-77 wgd
Cre02g2008 Cre-Chr2:33535797 Cre06g1437 Cre-Chr6:8708872 5.40E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2008 - - - 0.0